Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05625

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05610 and AO353_05615 are separated by 106 nucleotidesAO353_05615 and AO353_05620 are separated by 9 nucleotidesAO353_05620 and AO353_05625 are separated by 28 nucleotidesAO353_05625 and AO353_05630 overlap by 4 nucleotides AO353_05610: AO353_05610 - 23S rRNA methyltransferase, at 1,239,809 to 1,240,459 _05610 AO353_05615: AO353_05615 - RNA-binding protein, at 1,240,566 to 1,240,874 _05615 AO353_05620: AO353_05620 - MFS transporter, at 1,240,884 to 1,241,288 _05620 AO353_05625: AO353_05625 - transcription elongation factor GreA, at 1,241,317 to 1,241,793 _05625 AO353_05630: AO353_05630 - carbamoyl phosphate synthase large subunit, at 1,241,790 to 1,245,011 _05630 Position (kb) 1241 1242Strain fitness (log2 ratio) -1 0 1at 1240.478 kb on - strandat 1240.493 kb on - strandat 1240.540 kb on - strandat 1240.566 kb on - strandat 1240.566 kb on - strandat 1240.819 kb on - strand, within AO353_05615at 1240.933 kb on - strand, within AO353_05620at 1240.933 kb on - strand, within AO353_05620at 1240.933 kb on - strand, within AO353_05620at 1240.933 kb on - strand, within AO353_05620at 1240.933 kb on - strand, within AO353_05620at 1240.970 kb on - strand, within AO353_05620at 1240.970 kb on - strand, within AO353_05620at 1240.970 kb on - strand, within AO353_05620at 1241.024 kb on - strand, within AO353_05620at 1241.024 kb on - strand, within AO353_05620at 1241.024 kb on - strand, within AO353_05620at 1241.024 kb on - strand, within AO353_05620at 1241.024 kb on - strand, within AO353_05620at 1241.024 kb on - strand, within AO353_05620at 1241.039 kb on - strand, within AO353_05620at 1241.080 kb on - strand, within AO353_05620at 1241.208 kb on - strand, within AO353_05620at 1241.208 kb on - strand, within AO353_05620at 1241.323 kb on - strandat 1241.481 kb on - strand, within AO353_05625at 1241.652 kb on - strand, within AO353_05625at 1241.652 kb on - strand, within AO353_05625at 1241.652 kb on - strand, within AO353_05625at 1241.811 kb on + strandat 1241.812 kb on - strandat 1241.812 kb on - strandat 1241.812 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,240,478 - -0.5
1,240,493 - -0.3
1,240,540 - -0.7
1,240,566 - +0.1
1,240,566 - -0.5
1,240,819 - AO353_05615 0.82 -0.5
1,240,933 - AO353_05620 0.12 +0.4
1,240,933 - AO353_05620 0.12 -0.9
1,240,933 - AO353_05620 0.12 -1.3
1,240,933 - AO353_05620 0.12 -0.0
1,240,933 - AO353_05620 0.12 +1.0
1,240,970 - AO353_05620 0.21 -0.9
1,240,970 - AO353_05620 0.21 -0.9
1,240,970 - AO353_05620 0.21 +0.5
1,241,024 - AO353_05620 0.35 +1.3
1,241,024 - AO353_05620 0.35 +0.7
1,241,024 - AO353_05620 0.35 -1.3
1,241,024 - AO353_05620 0.35 -0.2
1,241,024 - AO353_05620 0.35 -0.5
1,241,024 - AO353_05620 0.35 -0.3
1,241,039 - AO353_05620 0.38 -0.5
1,241,080 - AO353_05620 0.48 -0.0
1,241,208 - AO353_05620 0.80 +1.3
1,241,208 - AO353_05620 0.80 +0.5
1,241,323 - +1.4
1,241,481 - AO353_05625 0.34 +0.4
1,241,652 - AO353_05625 0.70 -0.5
1,241,652 - AO353_05625 0.70 +0.8
1,241,652 - AO353_05625 0.70 +1.0
1,241,811 + +1.3
1,241,812 - -1.0
1,241,812 - -0.8
1,241,812 - +0.3

Or see this region's nucleotide sequence