Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04810

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_04805 and AO353_04810 are separated by 197 nucleotidesAO353_04810 and AO353_04815 are separated by 225 nucleotidesAO353_04815 and AO353_04820 are separated by 151 nucleotides AO353_04805: AO353_04805 - hypothetical protein, at 1,062,148 to 1,063,419 _04805 AO353_04810: AO353_04810 - hypothetical protein, at 1,063,617 to 1,064,015 _04810 AO353_04815: AO353_04815 - hypothetical protein, at 1,064,241 to 1,064,612 _04815 AO353_04820: AO353_04820 - hypothetical protein, at 1,064,764 to 1,065,507 _04820 Position (kb) 1063 1064 1065Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1062.685 kb on + strand, within AO353_04805at 1062.685 kb on + strand, within AO353_04805at 1062.685 kb on + strand, within AO353_04805at 1062.686 kb on - strand, within AO353_04805at 1062.686 kb on - strand, within AO353_04805at 1062.699 kb on + strand, within AO353_04805at 1062.699 kb on + strand, within AO353_04805at 1062.700 kb on - strand, within AO353_04805at 1062.700 kb on - strand, within AO353_04805at 1062.747 kb on + strand, within AO353_04805at 1062.748 kb on - strand, within AO353_04805at 1062.759 kb on + strand, within AO353_04805at 1062.759 kb on + strand, within AO353_04805at 1062.760 kb on - strand, within AO353_04805at 1062.840 kb on + strand, within AO353_04805at 1062.840 kb on + strand, within AO353_04805at 1062.840 kb on + strand, within AO353_04805at 1062.840 kb on + strand, within AO353_04805at 1062.840 kb on + strand, within AO353_04805at 1062.840 kb on + strand, within AO353_04805at 1062.841 kb on - strand, within AO353_04805at 1062.841 kb on - strand, within AO353_04805at 1062.889 kb on + strand, within AO353_04805at 1062.889 kb on + strand, within AO353_04805at 1062.889 kb on + strand, within AO353_04805at 1062.890 kb on - strand, within AO353_04805at 1062.890 kb on - strand, within AO353_04805at 1062.890 kb on - strand, within AO353_04805at 1062.890 kb on - strand, within AO353_04805at 1062.901 kb on + strand, within AO353_04805at 1062.902 kb on - strand, within AO353_04805at 1062.924 kb on + strand, within AO353_04805at 1062.981 kb on + strandat 1062.981 kb on + strand, within AO353_04805at 1062.981 kb on + strand, within AO353_04805at 1063.001 kb on + strand, within AO353_04805at 1063.001 kb on + strand, within AO353_04805at 1063.001 kb on + strand, within AO353_04805at 1063.001 kb on + strand, within AO353_04805at 1063.002 kb on - strand, within AO353_04805at 1063.002 kb on - strand, within AO353_04805at 1063.002 kb on - strand, within AO353_04805at 1063.002 kb on - strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.228 kb on + strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.229 kb on - strand, within AO353_04805at 1063.230 kb on + strand, within AO353_04805at 1063.240 kb on + strand, within AO353_04805at 1063.241 kb on - strand, within AO353_04805at 1063.328 kb on + strandat 1063.328 kb on + strandat 1063.328 kb on + strandat 1063.328 kb on + strandat 1063.329 kb on - strandat 1063.329 kb on - strandat 1063.329 kb on - strandat 1063.329 kb on - strandat 1063.351 kb on - strandat 1063.379 kb on + strandat 1063.379 kb on + strandat 1063.379 kb on + strandat 1063.380 kb on - strandat 1063.380 kb on - strandat 1063.380 kb on - strandat 1063.380 kb on - strandat 1063.403 kb on - strandat 1063.461 kb on + strandat 1063.461 kb on + strandat 1063.461 kb on + strandat 1063.462 kb on - strandat 1063.462 kb on - strandat 1063.483 kb on - strandat 1063.483 kb on - strandat 1063.501 kb on - strandat 1063.531 kb on + strandat 1063.586 kb on + strandat 1063.587 kb on - strandat 1063.626 kb on + strandat 1063.635 kb on + strandat 1063.636 kb on - strandat 1063.636 kb on - strandat 1063.706 kb on - strand, within AO353_04810at 1063.891 kb on - strand, within AO353_04810at 1063.891 kb on - strand, within AO353_04810at 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.001 kb on + strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.002 kb on - strandat 1064.061 kb on + strandat 1064.061 kb on + strandat 1064.062 kb on - strandat 1064.062 kb on - strandat 1064.062 kb on - strandat 1064.062 kb on - strandat 1064.062 kb on - strandat 1064.070 kb on + strandat 1064.070 kb on + strandat 1064.070 kb on + strandat 1064.070 kb on + strandat 1064.071 kb on - strandat 1064.071 kb on - strandat 1064.194 kb on + strandat 1064.210 kb on + strandat 1064.210 kb on + strandat 1064.210 kb on + strandat 1064.210 kb on + strandat 1064.210 kb on + strandat 1064.210 kb on + strandat 1064.210 kb on + strandat 1064.210 kb on + strandat 1064.211 kb on - strandat 1064.222 kb on - strandat 1064.222 kb on - strandat 1064.222 kb on - strandat 1064.222 kb on - strandat 1064.222 kb on - strandat 1064.222 kb on - strandat 1064.222 kb on - strandat 1064.226 kb on + strandat 1064.226 kb on + strandat 1064.226 kb on + strandat 1064.226 kb on + strandat 1064.226 kb on + strandat 1064.226 kb on + strandat 1064.226 kb on + strandat 1064.227 kb on - strandat 1064.227 kb on - strandat 1064.227 kb on - strandat 1064.227 kb on - strandat 1064.227 kb on - strandat 1064.227 kb on - strandat 1064.227 kb on - strandat 1064.246 kb on + strandat 1064.246 kb on + strandat 1064.247 kb on - strandat 1064.247 kb on - strandat 1064.253 kb on - strandat 1064.437 kb on + strand, within AO353_04815at 1064.610 kb on + strandat 1064.668 kb on + strandat 1064.668 kb on + strandat 1064.669 kb on - strandat 1064.669 kb on - strandat 1064.669 kb on - strandat 1064.669 kb on - strandat 1064.693 kb on + strandat 1064.693 kb on + strandat 1064.693 kb on + strandat 1064.694 kb on - strandat 1064.699 kb on + strandat 1064.699 kb on + strandat 1064.699 kb on + strandat 1064.699 kb on + strandat 1064.700 kb on - strandat 1064.700 kb on - strandat 1064.700 kb on - strandat 1064.700 kb on - strandat 1064.700 kb on - strandat 1064.700 kb on - strandat 1064.788 kb on - strandat 1064.860 kb on + strand, within AO353_04820at 1064.860 kb on + strand, within AO353_04820at 1064.860 kb on + strand, within AO353_04820at 1064.861 kb on - strand, within AO353_04820at 1064.861 kb on - strand, within AO353_04820at 1064.861 kb on - strand, within AO353_04820at 1064.861 kb on - strand, within AO353_04820at 1064.879 kb on + strand, within AO353_04820at 1064.879 kb on + strand, within AO353_04820at 1064.879 kb on + strand, within AO353_04820at 1064.879 kb on + strand, within AO353_04820at 1064.879 kb on + strand, within AO353_04820at 1064.879 kb on + strand, within AO353_04820at 1064.879 kb on + strand, within AO353_04820at 1064.879 kb on + strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.880 kb on - strand, within AO353_04820at 1064.893 kb on - strand, within AO353_04820at 1064.922 kb on + strand, within AO353_04820at 1064.958 kb on - strand, within AO353_04820at 1064.978 kb on - strand, within AO353_04820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
1,062,685 + AO353_04805 0.42 -0.9
1,062,685 + AO353_04805 0.42 +0.5
1,062,685 + AO353_04805 0.42 -0.5
1,062,686 - AO353_04805 0.42 +0.3
1,062,686 - AO353_04805 0.42 -0.3
1,062,699 + AO353_04805 0.43 -2.2
1,062,699 + AO353_04805 0.43 +0.1
1,062,700 - AO353_04805 0.43 +1.6
1,062,700 - AO353_04805 0.43 +0.1
1,062,747 + AO353_04805 0.47 -2.2
1,062,748 - AO353_04805 0.47 +1.2
1,062,759 + AO353_04805 0.48 +1.1
1,062,759 + AO353_04805 0.48 -0.9
1,062,760 - AO353_04805 0.48 -2.2
1,062,840 + AO353_04805 0.54 +0.8
1,062,840 + AO353_04805 0.54 -1.7
1,062,840 + AO353_04805 0.54 +1.2
1,062,840 + AO353_04805 0.54 +0.4
1,062,840 + AO353_04805 0.54 -0.8
1,062,840 + AO353_04805 0.54 -0.8
1,062,841 - AO353_04805 0.54 +0.8
1,062,841 - AO353_04805 0.54 -0.1
1,062,889 + AO353_04805 0.58 -1.6
1,062,889 + AO353_04805 0.58 -0.5
1,062,889 + AO353_04805 0.58 -1.1
1,062,890 - AO353_04805 0.58 +0.1
1,062,890 - AO353_04805 0.58 -0.5
1,062,890 - AO353_04805 0.58 -0.7
1,062,890 - AO353_04805 0.58 +0.0
1,062,901 + AO353_04805 0.59 +2.2
1,062,902 - AO353_04805 0.59 +1.9
1,062,924 + AO353_04805 0.61 +0.4
1,062,981 + +2.2
1,062,981 + AO353_04805 0.65 -0.2
1,062,981 + AO353_04805 0.65 +1.0
1,063,001 + AO353_04805 0.67 +0.2
1,063,001 + AO353_04805 0.67 -0.6
1,063,001 + AO353_04805 0.67 +0.7
1,063,001 + AO353_04805 0.67 -0.1
1,063,002 - AO353_04805 0.67 +0.3
1,063,002 - AO353_04805 0.67 +0.8
1,063,002 - AO353_04805 0.67 +1.0
1,063,002 - AO353_04805 0.67 -1.4
1,063,228 + AO353_04805 0.85 +0.8
1,063,228 + AO353_04805 0.85 +1.6
1,063,228 + AO353_04805 0.85 -1.1
1,063,228 + AO353_04805 0.85 +2.2
1,063,228 + AO353_04805 0.85 -0.9
1,063,228 + AO353_04805 0.85 -0.1
1,063,228 + AO353_04805 0.85 +1.4
1,063,228 + AO353_04805 0.85 -0.9
1,063,228 + AO353_04805 0.85 +0.9
1,063,228 + AO353_04805 0.85 -0.9
1,063,228 + AO353_04805 0.85 +0.1
1,063,228 + AO353_04805 0.85 +0.4
1,063,228 + AO353_04805 0.85 +0.2
1,063,228 + AO353_04805 0.85 -0.5
1,063,228 + AO353_04805 0.85 -0.9
1,063,229 - AO353_04805 0.85 +1.0
1,063,229 - AO353_04805 0.85 +0.7
1,063,229 - AO353_04805 0.85 +3.2
1,063,229 - AO353_04805 0.85 +0.1
1,063,229 - AO353_04805 0.85 +0.5
1,063,229 - AO353_04805 0.85 +0.1
1,063,229 - AO353_04805 0.85 +0.6
1,063,229 - AO353_04805 0.85 +0.9
1,063,229 - AO353_04805 0.85 +0.6
1,063,229 - AO353_04805 0.85 -0.8
1,063,229 - AO353_04805 0.85 -0.4
1,063,229 - AO353_04805 0.85 -0.8
1,063,229 - AO353_04805 0.85 -0.9
1,063,229 - AO353_04805 0.85 -1.4
1,063,229 - AO353_04805 0.85 -0.4
1,063,230 + AO353_04805 0.85 +0.8
1,063,240 + AO353_04805 0.86 +0.2
1,063,241 - AO353_04805 0.86 -0.9
1,063,328 + +0.2
1,063,328 + +0.1
1,063,328 + +0.2
1,063,328 + +0.2
1,063,329 - +0.8
1,063,329 - -1.0
1,063,329 - +0.8
1,063,329 - +0.6
1,063,351 - -0.8
1,063,379 + -0.6
1,063,379 + -1.9
1,063,379 + +1.5
1,063,380 - +0.5
1,063,380 - +0.3
1,063,380 - -1.1
1,063,380 - +0.6
1,063,403 - +0.0
1,063,461 + +0.3
1,063,461 + -0.4
1,063,461 + -0.9
1,063,462 - -2.3
1,063,462 - -1.1
1,063,483 - +0.7
1,063,483 - +0.1
1,063,501 - +0.9
1,063,531 + -0.1
1,063,586 + -0.9
1,063,587 - +0.8
1,063,626 + -0.8
1,063,635 + +0.6
1,063,636 - -0.3
1,063,636 - +1.1
1,063,706 - AO353_04810 0.22 +0.6
1,063,891 - AO353_04810 0.69 -1.7
1,063,891 - AO353_04810 0.69 +0.9
1,064,001 + -0.4
1,064,001 + -0.4
1,064,001 + -0.9
1,064,001 + +0.7
1,064,001 + +0.6
1,064,001 + -2.4
1,064,001 + -0.5
1,064,001 + -0.5
1,064,001 + -0.9
1,064,001 + +0.4
1,064,001 + +0.7
1,064,001 + -0.3
1,064,001 + -2.4
1,064,001 + +1.0
1,064,002 - +0.8
1,064,002 - +0.6
1,064,002 - +0.3
1,064,002 - -0.5
1,064,002 - -0.2
1,064,002 - -0.6
1,064,002 - +2.8
1,064,002 - -0.6
1,064,002 - +0.2
1,064,002 - +0.8
1,064,002 - +1.1
1,064,002 - -1.0
1,064,002 - +0.5
1,064,002 - +1.2
1,064,002 - -0.9
1,064,002 - -0.3
1,064,061 + -0.8
1,064,061 + -1.7
1,064,062 - -1.0
1,064,062 - -0.5
1,064,062 - +0.0
1,064,062 - +0.2
1,064,062 - +0.1
1,064,070 + +0.8
1,064,070 + -0.4
1,064,070 + -0.4
1,064,070 + +2.8
1,064,071 - -0.8
1,064,071 - +1.2
1,064,194 + -0.2
1,064,210 + -0.8
1,064,210 + -1.8
1,064,210 + -0.0
1,064,210 + -0.8
1,064,210 + -0.3
1,064,210 + +0.2
1,064,210 + -0.5
1,064,210 + -0.8
1,064,211 - -0.6
1,064,222 - -1.9
1,064,222 - -0.6
1,064,222 - +0.5
1,064,222 - +0.1
1,064,222 - +0.5
1,064,222 - +0.6
1,064,222 - -0.9
1,064,226 + -0.8
1,064,226 + +1.2
1,064,226 + -0.9
1,064,226 + -0.8
1,064,226 + -1.1
1,064,226 + +0.1
1,064,226 + -0.5
1,064,227 - -0.4
1,064,227 - -1.0
1,064,227 - -1.5
1,064,227 - +0.3
1,064,227 - -1.5
1,064,227 - +0.0
1,064,227 - -0.5
1,064,246 + +1.8
1,064,246 + +0.5
1,064,247 - -1.2
1,064,247 - -0.1
1,064,253 - -0.6
1,064,437 + AO353_04815 0.53 +0.7
1,064,610 + -0.1
1,064,668 + -1.3
1,064,668 + -0.4
1,064,669 - -0.3
1,064,669 - -0.1
1,064,669 - -0.6
1,064,669 - +0.6
1,064,693 + +1.0
1,064,693 + +0.8
1,064,693 + -1.3
1,064,694 - -0.4
1,064,699 + -0.5
1,064,699 + -0.1
1,064,699 + -0.8
1,064,699 + -1.5
1,064,700 - -0.3
1,064,700 - +0.1
1,064,700 - -0.9
1,064,700 - -0.6
1,064,700 - -0.4
1,064,700 - -2.2
1,064,788 - -0.2
1,064,860 + AO353_04820 0.13 +1.0
1,064,860 + AO353_04820 0.13 -1.2
1,064,860 + AO353_04820 0.13 -0.8
1,064,861 - AO353_04820 0.13 -1.1
1,064,861 - AO353_04820 0.13 +0.4
1,064,861 - AO353_04820 0.13 +0.2
1,064,861 - AO353_04820 0.13 -0.8
1,064,879 + AO353_04820 0.15 -0.7
1,064,879 + AO353_04820 0.15 +0.0
1,064,879 + AO353_04820 0.15 -0.5
1,064,879 + AO353_04820 0.15 -0.3
1,064,879 + AO353_04820 0.15 -0.8
1,064,879 + AO353_04820 0.15 -1.5
1,064,879 + AO353_04820 0.15 +0.8
1,064,879 + AO353_04820 0.15 +0.5
1,064,880 - AO353_04820 0.16 +0.1
1,064,880 - AO353_04820 0.16 +0.4
1,064,880 - AO353_04820 0.16 -1.5
1,064,880 - AO353_04820 0.16 +1.2
1,064,880 - AO353_04820 0.16 +0.0
1,064,880 - AO353_04820 0.16 -0.4
1,064,880 - AO353_04820 0.16 +0.5
1,064,880 - AO353_04820 0.16 -1.1
1,064,880 - AO353_04820 0.16 -0.2
1,064,880 - AO353_04820 0.16 -0.8
1,064,880 - AO353_04820 0.16 -1.5
1,064,880 - AO353_04820 0.16 -0.6
1,064,880 - AO353_04820 0.16 -0.4
1,064,880 - AO353_04820 0.16 -1.1
1,064,880 - AO353_04820 0.16 -0.8
1,064,880 - AO353_04820 0.16 -0.5
1,064,893 - AO353_04820 0.17 -1.9
1,064,922 + AO353_04820 0.21 +0.3
1,064,958 - AO353_04820 0.26 +0.6
1,064,978 - AO353_04820 0.29 +1.6

Or see this region's nucleotide sequence