Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04350 and AO353_04355 are separated by 66 nucleotides AO353_04355 and AO353_04360 are separated by 136 nucleotides
AO353_04350: AO353_04350 - threonine synthase, at 937,802 to 939,211
_04350
AO353_04355: AO353_04355 - homoserine dehydrogenase, at 939,278 to 940,582
_04355
AO353_04360: AO353_04360 - protein-disulfide isomerase, at 940,719 to 941,450
_04360
Position (kb) 939
940
941 Strain fitness (log2 ratio) -2
-1
0
1
2 at 938.512 kb on - strand, within AO353_04350 at 939.225 kb on - strand at 939.225 kb on - strand at 939.271 kb on + strand at 939.279 kb on + strand at 939.280 kb on - strand at 939.280 kb on - strand at 939.280 kb on - strand at 939.280 kb on - strand at 939.280 kb on - strand at 939.280 kb on - strand at 939.699 kb on + strand, within AO353_04355 at 939.830 kb on - strand, within AO353_04355 at 940.358 kb on + strand, within AO353_04355 at 940.566 kb on - strand at 940.653 kb on - strand at 940.653 kb on - strand at 940.653 kb on - strand at 940.655 kb on + strand at 940.656 kb on - strand at 940.656 kb on - strand at 940.721 kb on - strand at 940.809 kb on - strand, within AO353_04360 at 940.993 kb on + strand, within AO353_04360 at 940.993 kb on + strand, within AO353_04360 at 940.993 kb on + strand, within AO353_04360 at 940.993 kb on + strand, within AO353_04360 at 940.994 kb on - strand, within AO353_04360 at 940.994 kb on - strand, within AO353_04360 at 940.994 kb on - strand, within AO353_04360 at 941.076 kb on + strand, within AO353_04360 at 941.076 kb on + strand, within AO353_04360 at 941.077 kb on - strand, within AO353_04360 at 941.077 kb on - strand, within AO353_04360 at 941.221 kb on + strand, within AO353_04360 at 941.221 kb on + strand, within AO353_04360 at 941.221 kb on + strand, within AO353_04360 at 941.221 kb on + strand, within AO353_04360 at 941.221 kb on + strand, within AO353_04360 at 941.222 kb on - strand, within AO353_04360 at 941.222 kb on - strand, within AO353_04360 at 941.222 kb on - strand, within AO353_04360 at 941.222 kb on - strand, within AO353_04360 at 941.236 kb on + strand, within AO353_04360 at 941.236 kb on + strand, within AO353_04360 at 941.236 kb on + strand, within AO353_04360 at 941.236 kb on + strand, within AO353_04360 at 941.236 kb on + strand, within AO353_04360 at 941.236 kb on + strand, within AO353_04360 at 941.237 kb on - strand, within AO353_04360 at 941.237 kb on - strand, within AO353_04360 at 941.237 kb on - strand, within AO353_04360 at 941.258 kb on - strand, within AO353_04360 at 941.290 kb on + strand, within AO353_04360 at 941.291 kb on - strand, within AO353_04360 at 941.291 kb on - strand, within AO353_04360 at 941.291 kb on - strand, within AO353_04360 at 941.316 kb on - strand, within AO353_04360 at 941.316 kb on - strand, within AO353_04360 at 941.360 kb on + strand, within AO353_04360 at 941.360 kb on + strand, within AO353_04360 at 941.360 kb on + strand, within AO353_04360 at 941.361 kb on - strand, within AO353_04360 at 941.372 kb on + strand, within AO353_04360 at 941.372 kb on + strand, within AO353_04360 at 941.373 kb on - strand, within AO353_04360 at 941.483 kb on + strand at 941.483 kb on + strand at 941.484 kb on - strand at 941.484 kb on - strand at 941.542 kb on + strand at 941.542 kb on + strand at 941.542 kb on + strand at 941.549 kb on + strand at 941.549 kb on + strand at 941.549 kb on + strand at 941.549 kb on + strand at 941.550 kb on - strand at 941.550 kb on - strand at 941.550 kb on - strand at 941.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 938,512 - AO353_04350 0.50 -0.1 939,225 - -0.6 939,225 - +0.6 939,271 + -1.6 939,279 + +0.6 939,280 - +0.9 939,280 - +0.2 939,280 - -0.3 939,280 - -1.8 939,280 - -0.1 939,280 - -0.1 939,699 + AO353_04355 0.32 -0.4 939,830 - AO353_04355 0.42 -0.1 940,358 + AO353_04355 0.83 -1.0 940,566 - -0.4 940,653 - -1.7 940,653 - +0.1 940,653 - -2.2 940,655 + -0.6 940,656 - +0.6 940,656 - -0.2 940,721 - +0.6 940,809 - AO353_04360 0.12 +0.3 940,993 + AO353_04360 0.37 -0.1 940,993 + AO353_04360 0.37 -0.8 940,993 + AO353_04360 0.37 -1.2 940,993 + AO353_04360 0.37 -2.3 940,994 - AO353_04360 0.38 +0.2 940,994 - AO353_04360 0.38 +0.2 940,994 - AO353_04360 0.38 -1.3 941,076 + AO353_04360 0.49 -0.4 941,076 + AO353_04360 0.49 +1.5 941,077 - AO353_04360 0.49 -1.9 941,077 - AO353_04360 0.49 +0.6 941,221 + AO353_04360 0.69 -1.2 941,221 + AO353_04360 0.69 +1.3 941,221 + AO353_04360 0.69 -0.5 941,221 + AO353_04360 0.69 +1.6 941,221 + AO353_04360 0.69 -2.2 941,222 - AO353_04360 0.69 -0.0 941,222 - AO353_04360 0.69 +0.2 941,222 - AO353_04360 0.69 +1.1 941,222 - AO353_04360 0.69 +1.3 941,236 + AO353_04360 0.71 -0.7 941,236 + AO353_04360 0.71 -0.3 941,236 + AO353_04360 0.71 -0.9 941,236 + AO353_04360 0.71 -0.9 941,236 + AO353_04360 0.71 -1.1 941,236 + AO353_04360 0.71 -0.9 941,237 - AO353_04360 0.71 -0.4 941,237 - AO353_04360 0.71 +0.6 941,237 - AO353_04360 0.71 -0.4 941,258 - AO353_04360 0.74 -0.1 941,290 + AO353_04360 0.78 -0.5 941,291 - AO353_04360 0.78 +1.9 941,291 - AO353_04360 0.78 -1.3 941,291 - AO353_04360 0.78 +0.8 941,316 - AO353_04360 0.82 -1.4 941,316 - AO353_04360 0.82 -0.3 941,360 + AO353_04360 0.88 +0.1 941,360 + AO353_04360 0.88 +0.2 941,360 + AO353_04360 0.88 +0.8 941,361 - AO353_04360 0.88 -0.1 941,372 + AO353_04360 0.89 -0.4 941,372 + AO353_04360 0.89 -1.4 941,373 - AO353_04360 0.89 -0.6 941,483 + -0.6 941,483 + -0.5 941,484 - +0.9 941,484 - -0.8 941,542 + -0.9 941,542 + -1.1 941,542 + +0.6 941,549 + -0.8 941,549 + -0.5 941,549 + +0.4 941,549 + -0.1 941,550 - +0.7 941,550 - -0.6 941,550 - +1.5 941,550 - -1.4
Or see this region's nucleotide sequence