Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04355

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_04350 and AO353_04355 are separated by 66 nucleotidesAO353_04355 and AO353_04360 are separated by 136 nucleotides AO353_04350: AO353_04350 - threonine synthase, at 937,802 to 939,211 _04350 AO353_04355: AO353_04355 - homoserine dehydrogenase, at 939,278 to 940,582 _04355 AO353_04360: AO353_04360 - protein-disulfide isomerase, at 940,719 to 941,450 _04360 Position (kb) 939 940 941Strain fitness (log2 ratio) -2 -1 0 1 2at 938.512 kb on - strand, within AO353_04350at 939.225 kb on - strandat 939.225 kb on - strandat 939.271 kb on + strandat 939.279 kb on + strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.280 kb on - strandat 939.699 kb on + strand, within AO353_04355at 939.830 kb on - strand, within AO353_04355at 940.358 kb on + strand, within AO353_04355at 940.566 kb on - strandat 940.653 kb on - strandat 940.653 kb on - strandat 940.653 kb on - strandat 940.655 kb on + strandat 940.656 kb on - strandat 940.656 kb on - strandat 940.721 kb on - strandat 940.809 kb on - strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.993 kb on + strand, within AO353_04360at 940.994 kb on - strand, within AO353_04360at 940.994 kb on - strand, within AO353_04360at 940.994 kb on - strand, within AO353_04360at 941.076 kb on + strand, within AO353_04360at 941.076 kb on + strand, within AO353_04360at 941.077 kb on - strand, within AO353_04360at 941.077 kb on - strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.221 kb on + strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.222 kb on - strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.236 kb on + strand, within AO353_04360at 941.237 kb on - strand, within AO353_04360at 941.237 kb on - strand, within AO353_04360at 941.237 kb on - strand, within AO353_04360at 941.258 kb on - strand, within AO353_04360at 941.290 kb on + strand, within AO353_04360at 941.291 kb on - strand, within AO353_04360at 941.291 kb on - strand, within AO353_04360at 941.291 kb on - strand, within AO353_04360at 941.316 kb on - strand, within AO353_04360at 941.316 kb on - strand, within AO353_04360at 941.360 kb on + strand, within AO353_04360at 941.360 kb on + strand, within AO353_04360at 941.360 kb on + strand, within AO353_04360at 941.361 kb on - strand, within AO353_04360at 941.372 kb on + strand, within AO353_04360at 941.372 kb on + strand, within AO353_04360at 941.373 kb on - strand, within AO353_04360at 941.483 kb on + strandat 941.483 kb on + strandat 941.484 kb on - strandat 941.484 kb on - strandat 941.542 kb on + strandat 941.542 kb on + strandat 941.542 kb on + strandat 941.549 kb on + strandat 941.549 kb on + strandat 941.549 kb on + strandat 941.549 kb on + strandat 941.550 kb on - strandat 941.550 kb on - strandat 941.550 kb on - strandat 941.550 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
938,512 - AO353_04350 0.50 -0.1
939,225 - -0.6
939,225 - +0.6
939,271 + -1.6
939,279 + +0.6
939,280 - +0.9
939,280 - +0.2
939,280 - -0.3
939,280 - -1.8
939,280 - -0.1
939,280 - -0.1
939,699 + AO353_04355 0.32 -0.4
939,830 - AO353_04355 0.42 -0.1
940,358 + AO353_04355 0.83 -1.0
940,566 - -0.4
940,653 - -1.7
940,653 - +0.1
940,653 - -2.2
940,655 + -0.6
940,656 - +0.6
940,656 - -0.2
940,721 - +0.6
940,809 - AO353_04360 0.12 +0.3
940,993 + AO353_04360 0.37 -0.1
940,993 + AO353_04360 0.37 -0.8
940,993 + AO353_04360 0.37 -1.2
940,993 + AO353_04360 0.37 -2.3
940,994 - AO353_04360 0.38 +0.2
940,994 - AO353_04360 0.38 +0.2
940,994 - AO353_04360 0.38 -1.3
941,076 + AO353_04360 0.49 -0.4
941,076 + AO353_04360 0.49 +1.5
941,077 - AO353_04360 0.49 -1.9
941,077 - AO353_04360 0.49 +0.6
941,221 + AO353_04360 0.69 -1.2
941,221 + AO353_04360 0.69 +1.3
941,221 + AO353_04360 0.69 -0.5
941,221 + AO353_04360 0.69 +1.6
941,221 + AO353_04360 0.69 -2.2
941,222 - AO353_04360 0.69 -0.0
941,222 - AO353_04360 0.69 +0.2
941,222 - AO353_04360 0.69 +1.1
941,222 - AO353_04360 0.69 +1.3
941,236 + AO353_04360 0.71 -0.7
941,236 + AO353_04360 0.71 -0.3
941,236 + AO353_04360 0.71 -0.9
941,236 + AO353_04360 0.71 -0.9
941,236 + AO353_04360 0.71 -1.1
941,236 + AO353_04360 0.71 -0.9
941,237 - AO353_04360 0.71 -0.4
941,237 - AO353_04360 0.71 +0.6
941,237 - AO353_04360 0.71 -0.4
941,258 - AO353_04360 0.74 -0.1
941,290 + AO353_04360 0.78 -0.5
941,291 - AO353_04360 0.78 +1.9
941,291 - AO353_04360 0.78 -1.3
941,291 - AO353_04360 0.78 +0.8
941,316 - AO353_04360 0.82 -1.4
941,316 - AO353_04360 0.82 -0.3
941,360 + AO353_04360 0.88 +0.1
941,360 + AO353_04360 0.88 +0.2
941,360 + AO353_04360 0.88 +0.8
941,361 - AO353_04360 0.88 -0.1
941,372 + AO353_04360 0.89 -0.4
941,372 + AO353_04360 0.89 -1.4
941,373 - AO353_04360 0.89 -0.6
941,483 + -0.6
941,483 + -0.5
941,484 - +0.9
941,484 - -0.8
941,542 + -0.9
941,542 + -1.1
941,542 + +0.6
941,549 + -0.8
941,549 + -0.5
941,549 + +0.4
941,549 + -0.1
941,550 - +0.7
941,550 - -0.6
941,550 - +1.5
941,550 - -1.4

Or see this region's nucleotide sequence