Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03515

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03510 and AO353_03515 are separated by 401 nucleotidesAO353_03515 and AO353_03520 are separated by 96 nucleotides AO353_03510: AO353_03510 - glycine cleavage system protein T, at 752,692 to 753,816 _03510 AO353_03515: AO353_03515 - cold-shock protein, at 754,218 to 754,430 _03515 AO353_03520: AO353_03520 - hypothetical protein, at 754,527 to 755,015 _03520 Position (kb) 754 755Strain fitness (log2 ratio) -2 -1 0 1 2 3at 753.410 kb on - strand, within AO353_03510at 753.472 kb on - strand, within AO353_03510at 753.472 kb on - strand, within AO353_03510at 753.527 kb on + strand, within AO353_03510at 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.712 kb on + strandat 753.713 kb on - strandat 753.713 kb on - strandat 753.713 kb on - strandat 753.713 kb on - strandat 753.713 kb on - strandat 753.713 kb on - strandat 753.713 kb on - strandat 753.713 kb on - strandat 753.713 kb on - strandat 753.746 kb on + strandat 753.746 kb on + strandat 753.746 kb on + strandat 753.746 kb on + strandat 753.746 kb on + strandat 753.746 kb on + strandat 753.747 kb on - strandat 753.747 kb on - strandat 753.747 kb on - strandat 753.747 kb on - strandat 753.747 kb on - strandat 753.747 kb on - strandat 753.747 kb on - strandat 753.747 kb on - strandat 753.773 kb on + strandat 753.774 kb on - strandat 753.802 kb on + strandat 753.802 kb on + strandat 753.803 kb on - strandat 753.803 kb on - strandat 753.803 kb on - strandat 753.803 kb on - strandat 753.803 kb on - strandat 753.828 kb on + strandat 753.828 kb on + strandat 753.829 kb on - strandat 753.829 kb on - strandat 753.830 kb on + strandat 753.830 kb on + strandat 753.831 kb on - strandat 753.831 kb on - strandat 753.831 kb on - strandat 753.835 kb on - strandat 753.858 kb on + strandat 753.859 kb on - strandat 753.891 kb on + strandat 753.891 kb on + strandat 753.926 kb on + strandat 753.926 kb on + strandat 753.926 kb on + strandat 753.929 kb on - strandat 753.955 kb on + strandat 754.041 kb on + strandat 754.051 kb on - strandat 754.103 kb on + strandat 754.108 kb on + strandat 754.108 kb on + strandat 754.109 kb on - strandat 754.109 kb on - strandat 754.109 kb on - strandat 754.115 kb on + strandat 754.115 kb on + strandat 754.115 kb on + strandat 754.115 kb on + strandat 754.115 kb on + strandat 754.115 kb on + strandat 754.116 kb on - strandat 754.116 kb on - strandat 754.119 kb on + strandat 754.119 kb on + strandat 754.119 kb on + strandat 754.119 kb on + strandat 754.120 kb on - strandat 754.120 kb on - strandat 754.120 kb on - strandat 754.120 kb on - strandat 754.120 kb on - strandat 754.140 kb on + strandat 754.140 kb on + strandat 754.140 kb on + strandat 754.140 kb on + strandat 754.140 kb on + strandat 754.141 kb on - strandat 754.141 kb on - strandat 754.164 kb on - strandat 754.164 kb on - strandat 754.212 kb on + strandat 754.253 kb on + strand, within AO353_03515at 754.277 kb on + strand, within AO353_03515at 754.278 kb on - strand, within AO353_03515at 754.331 kb on + strand, within AO353_03515at 754.414 kb on + strandat 754.415 kb on - strandat 754.602 kb on + strand, within AO353_03520at 754.650 kb on + strand, within AO353_03520at 754.650 kb on + strand, within AO353_03520at 754.650 kb on + strand, within AO353_03520at 754.650 kb on + strand, within AO353_03520at 754.650 kb on + strand, within AO353_03520at 754.651 kb on - strand, within AO353_03520at 754.651 kb on - strand, within AO353_03520at 754.971 kb on + strandat 754.971 kb on + strandat 754.972 kb on - strandat 754.972 kb on - strandat 755.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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753,410 - AO353_03510 0.64 -0.2
753,472 - AO353_03510 0.69 -0.1
753,472 - AO353_03510 0.69 -0.8
753,527 + AO353_03510 0.74 -1.5
753,712 + -1.1
753,712 + +0.2
753,712 + -0.7
753,712 + +0.1
753,712 + +0.5
753,712 + -0.8
753,712 + +2.1
753,712 + +0.5
753,712 + -0.8
753,712 + +2.1
753,712 + +0.7
753,712 + +0.9
753,712 + -0.6
753,712 + +0.3
753,712 + -0.2
753,713 - +0.5
753,713 - -0.3
753,713 - -0.7
753,713 - +0.5
753,713 - -0.5
753,713 - +0.3
753,713 - +1.2
753,713 - -0.4
753,713 - -0.3
753,746 + -0.5
753,746 + +0.2
753,746 + +1.1
753,746 + +0.1
753,746 + +0.9
753,746 + +0.5
753,747 - -2.2
753,747 - -0.5
753,747 - +0.5
753,747 - -0.7
753,747 - +0.0
753,747 - -0.5
753,747 - +0.7
753,747 - +0.8
753,773 + +1.1
753,774 - +0.7
753,802 + -1.6
753,802 + -1.9
753,803 - +1.1
753,803 - +2.5
753,803 - -0.1
753,803 - +0.4
753,803 - +0.5
753,828 + -1.7
753,828 + -0.7
753,829 - +0.9
753,829 - -0.6
753,830 + +0.1
753,830 + -1.2
753,831 - +2.8
753,831 - -0.9
753,831 - -0.7
753,835 - -0.2
753,858 + +2.1
753,859 - +0.6
753,891 + +1.5
753,891 + -0.4
753,926 + -1.9
753,926 + +0.1
753,926 + +0.8
753,929 - +0.2
753,955 + +0.5
754,041 + -0.9
754,051 - -0.1
754,103 + +1.8
754,108 + -1.2
754,108 + -1.4
754,109 - +1.8
754,109 - -0.5
754,109 - +0.9
754,115 + -0.5
754,115 + -0.6
754,115 + -0.4
754,115 + +0.2
754,115 + +0.3
754,115 + +0.8
754,116 - -0.1
754,116 - +2.1
754,119 + -0.9
754,119 + +0.7
754,119 + +1.0
754,119 + +0.1
754,120 - -0.2
754,120 - +0.1
754,120 - +0.5
754,120 - -0.0
754,120 - -0.9
754,140 + +1.7
754,140 + +0.5
754,140 + +1.1
754,140 + +0.3
754,140 + -1.9
754,141 - +1.4
754,141 - -0.0
754,164 - -0.0
754,164 - +0.5
754,212 + +0.3
754,253 + AO353_03515 0.16 +1.4
754,277 + AO353_03515 0.28 +1.4
754,278 - AO353_03515 0.28 -0.1
754,331 + AO353_03515 0.53 +0.7
754,414 + +0.7
754,415 - +0.4
754,602 + AO353_03520 0.15 +0.6
754,650 + AO353_03520 0.25 -0.0
754,650 + AO353_03520 0.25 -0.5
754,650 + AO353_03520 0.25 +2.4
754,650 + AO353_03520 0.25 +1.8
754,650 + AO353_03520 0.25 +0.8
754,651 - AO353_03520 0.25 +0.7
754,651 - AO353_03520 0.25 +0.1
754,971 + -2.1
754,971 + -2.0
754,972 - +2.7
754,972 - +0.3
755,272 + -0.5

Or see this region's nucleotide sequence