Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03180

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_03170 and AO353_03175 are separated by 43 nucleotidesAO353_03175 and AO353_03180 are separated by 37 nucleotidesAO353_03180 and AO353_03185 are separated by 122 nucleotidesAO353_03185 and AO353_03190 are separated by 46 nucleotides AO353_03170: AO353_03170 - nuclease PIN, at 676,705 to 678,321 _03170 AO353_03175: AO353_03175 - hypothetical protein, at 678,365 to 678,877 _03175 AO353_03180: AO353_03180 - transcriptional regulator, at 678,915 to 679,811 _03180 AO353_03185: AO353_03185 - short-chain dehydrogenase, at 679,934 to 680,692 _03185 AO353_03190: AO353_03190 - hypothetical protein, at 680,739 to 681,176 _03190 Position (kb) 678 679 680Strain fitness (log2 ratio) -2 -1 0 1 2at 678.079 kb on + strand, within AO353_03170at 678.079 kb on + strand, within AO353_03170at 678.079 kb on + strand, within AO353_03170at 678.079 kb on + strand, within AO353_03170at 678.079 kb on + strand, within AO353_03170at 678.080 kb on - strand, within AO353_03170at 678.080 kb on - strand, within AO353_03170at 678.080 kb on - strand, within AO353_03170at 678.295 kb on + strandat 678.295 kb on + strandat 678.296 kb on - strandat 678.335 kb on + strandat 678.335 kb on + strandat 678.336 kb on - strandat 678.336 kb on - strandat 678.378 kb on + strandat 678.378 kb on + strandat 678.378 kb on + strandat 678.378 kb on + strandat 678.378 kb on + strandat 678.378 kb on + strandat 678.379 kb on - strandat 678.379 kb on - strandat 678.433 kb on + strand, within AO353_03175at 678.686 kb on + strand, within AO353_03175at 678.686 kb on + strand, within AO353_03175at 678.686 kb on + strand, within AO353_03175at 678.686 kb on + strand, within AO353_03175at 678.686 kb on + strand, within AO353_03175at 678.686 kb on + strand, within AO353_03175at 678.687 kb on - strand, within AO353_03175at 678.687 kb on - strand, within AO353_03175at 678.687 kb on - strand, within AO353_03175at 678.725 kb on + strand, within AO353_03175at 678.725 kb on + strand, within AO353_03175at 678.725 kb on + strand, within AO353_03175at 678.725 kb on + strand, within AO353_03175at 678.725 kb on + strand, within AO353_03175at 678.725 kb on + strand, within AO353_03175at 678.725 kb on + strand, within AO353_03175at 678.751 kb on - strand, within AO353_03175at 678.751 kb on - strand, within AO353_03175at 678.777 kb on + strand, within AO353_03175at 678.777 kb on + strand, within AO353_03175at 678.863 kb on + strandat 678.863 kb on + strandat 678.863 kb on + strandat 678.864 kb on - strandat 678.864 kb on - strandat 678.891 kb on - strandat 678.909 kb on + strandat 678.909 kb on + strandat 678.909 kb on + strandat 678.909 kb on + strandat 678.909 kb on + strandat 678.909 kb on + strandat 678.910 kb on - strandat 678.910 kb on - strandat 678.910 kb on - strandat 678.910 kb on - strandat 678.970 kb on - strandat 678.994 kb on + strandat 678.994 kb on + strandat 678.995 kb on - strandat 678.995 kb on - strandat 679.066 kb on + strand, within AO353_03180at 679.066 kb on + strand, within AO353_03180at 679.067 kb on - strand, within AO353_03180at 679.129 kb on + strand, within AO353_03180at 679.140 kb on - strand, within AO353_03180at 679.142 kb on + strand, within AO353_03180at 679.142 kb on + strand, within AO353_03180at 679.142 kb on + strand, within AO353_03180at 679.142 kb on + strand, within AO353_03180at 679.198 kb on + strand, within AO353_03180at 679.198 kb on + strand, within AO353_03180at 679.198 kb on + strand, within AO353_03180at 679.198 kb on + strand, within AO353_03180at 679.199 kb on - strand, within AO353_03180at 679.199 kb on - strand, within AO353_03180at 679.199 kb on - strand, within AO353_03180at 679.228 kb on - strand, within AO353_03180at 679.237 kb on + strand, within AO353_03180at 679.237 kb on + strand, within AO353_03180at 679.237 kb on + strand, within AO353_03180at 679.237 kb on + strand, within AO353_03180at 679.237 kb on + strand, within AO353_03180at 679.237 kb on + strand, within AO353_03180at 679.238 kb on - strand, within AO353_03180at 679.238 kb on - strand, within AO353_03180at 679.238 kb on - strand, within AO353_03180at 679.238 kb on - strand, within AO353_03180at 679.238 kb on - strand, within AO353_03180at 679.289 kb on - strand, within AO353_03180at 679.301 kb on - strand, within AO353_03180at 679.301 kb on - strand, within AO353_03180at 679.520 kb on + strand, within AO353_03180at 679.521 kb on - strand, within AO353_03180at 679.616 kb on - strand, within AO353_03180at 679.718 kb on + strand, within AO353_03180at 679.718 kb on + strand, within AO353_03180at 679.719 kb on - strand, within AO353_03180at 679.719 kb on - strand, within AO353_03180at 679.719 kb on - strand, within AO353_03180at 680.033 kb on + strand, within AO353_03185at 680.033 kb on + strand, within AO353_03185at 680.033 kb on + strand, within AO353_03185at 680.033 kb on + strand, within AO353_03185at 680.033 kb on + strand, within AO353_03185at 680.034 kb on - strand, within AO353_03185at 680.034 kb on - strand, within AO353_03185at 680.034 kb on - strand, within AO353_03185at 680.034 kb on - strand, within AO353_03185at 680.356 kb on + strand, within AO353_03185at 680.356 kb on + strand, within AO353_03185at 680.356 kb on + strand, within AO353_03185at 680.357 kb on - strand, within AO353_03185at 680.402 kb on + strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.403 kb on - strand, within AO353_03185at 680.483 kb on - strand, within AO353_03185at 680.569 kb on + strand, within AO353_03185at 680.569 kb on + strand, within AO353_03185at 680.569 kb on + strand, within AO353_03185at 680.691 kb on - strandat 680.740 kb on + strandat 680.740 kb on + strandat 680.763 kb on + strandat 680.788 kb on + strand, within AO353_03190at 680.789 kb on - strand, within AO353_03190at 680.789 kb on - strand, within AO353_03190at 680.800 kb on + strand, within AO353_03190at 680.801 kb on - strand, within AO353_03190at 680.801 kb on - strand, within AO353_03190at 680.801 kb on - strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.806 kb on + strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190at 680.807 kb on - strand, within AO353_03190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
678,079 + AO353_03170 0.85 +0.4
678,079 + AO353_03170 0.85 +0.1
678,079 + AO353_03170 0.85 +0.3
678,079 + AO353_03170 0.85 -0.0
678,079 + AO353_03170 0.85 +0.2
678,080 - AO353_03170 0.85 +0.3
678,080 - AO353_03170 0.85 -0.7
678,080 - AO353_03170 0.85 -1.4
678,295 + -1.3
678,295 + -1.0
678,296 - -0.3
678,335 + +0.3
678,335 + +0.3
678,336 - -1.1
678,336 - +0.1
678,378 + +0.5
678,378 + +2.1
678,378 + -0.2
678,378 + +1.1
678,378 + +0.6
678,378 + -1.1
678,379 - +0.1
678,379 - -1.4
678,433 + AO353_03175 0.13 -1.5
678,686 + AO353_03175 0.63 +1.1
678,686 + AO353_03175 0.63 -1.8
678,686 + AO353_03175 0.63 +1.1
678,686 + AO353_03175 0.63 +0.8
678,686 + AO353_03175 0.63 -0.6
678,686 + AO353_03175 0.63 +0.3
678,687 - AO353_03175 0.63 +0.4
678,687 - AO353_03175 0.63 -0.9
678,687 - AO353_03175 0.63 +1.1
678,725 + AO353_03175 0.70 -1.3
678,725 + AO353_03175 0.70 -1.9
678,725 + AO353_03175 0.70 +0.3
678,725 + AO353_03175 0.70 -2.2
678,725 + AO353_03175 0.70 -0.9
678,725 + AO353_03175 0.70 +0.7
678,725 + AO353_03175 0.70 +0.1
678,751 - AO353_03175 0.75 -0.7
678,751 - AO353_03175 0.75 +0.5
678,777 + AO353_03175 0.80 -1.3
678,777 + AO353_03175 0.80 +1.6
678,863 + +0.7
678,863 + +0.1
678,863 + -1.0
678,864 - +0.1
678,864 - +0.7
678,891 - +1.0
678,909 + -1.2
678,909 + -0.7
678,909 + +0.1
678,909 + -0.2
678,909 + -0.2
678,909 + -0.1
678,910 - -2.2
678,910 - +0.6
678,910 - -0.9
678,910 - +0.5
678,970 - +1.8
678,994 + +0.5
678,994 + +0.3
678,995 - -0.6
678,995 - +0.5
679,066 + AO353_03180 0.17 +1.3
679,066 + AO353_03180 0.17 -0.3
679,067 - AO353_03180 0.17 +0.5
679,129 + AO353_03180 0.24 +1.0
679,140 - AO353_03180 0.25 -0.4
679,142 + AO353_03180 0.25 -0.5
679,142 + AO353_03180 0.25 +0.5
679,142 + AO353_03180 0.25 -0.4
679,142 + AO353_03180 0.25 +0.3
679,198 + AO353_03180 0.32 +1.1
679,198 + AO353_03180 0.32 +1.0
679,198 + AO353_03180 0.32 -0.4
679,198 + AO353_03180 0.32 +0.7
679,199 - AO353_03180 0.32 -2.3
679,199 - AO353_03180 0.32 +1.1
679,199 - AO353_03180 0.32 +1.7
679,228 - AO353_03180 0.35 +1.6
679,237 + AO353_03180 0.36 -0.4
679,237 + AO353_03180 0.36 +0.5
679,237 + AO353_03180 0.36 -0.7
679,237 + AO353_03180 0.36 +0.3
679,237 + AO353_03180 0.36 -1.2
679,237 + AO353_03180 0.36 +0.6
679,238 - AO353_03180 0.36 -0.3
679,238 - AO353_03180 0.36 +0.3
679,238 - AO353_03180 0.36 +0.1
679,238 - AO353_03180 0.36 -1.1
679,238 - AO353_03180 0.36 -0.0
679,289 - AO353_03180 0.42 +0.5
679,301 - AO353_03180 0.43 +0.2
679,301 - AO353_03180 0.43 +1.2
679,520 + AO353_03180 0.67 -0.9
679,521 - AO353_03180 0.68 -1.4
679,616 - AO353_03180 0.78 +0.3
679,718 + AO353_03180 0.90 -2.0
679,718 + AO353_03180 0.90 +0.1
679,719 - AO353_03180 0.90 -0.3
679,719 - AO353_03180 0.90 +0.7
679,719 - AO353_03180 0.90 -0.0
680,033 + AO353_03185 0.13 -0.3
680,033 + AO353_03185 0.13 +0.1
680,033 + AO353_03185 0.13 -0.7
680,033 + AO353_03185 0.13 -1.5
680,033 + AO353_03185 0.13 +0.5
680,034 - AO353_03185 0.13 -0.1
680,034 - AO353_03185 0.13 +0.0
680,034 - AO353_03185 0.13 +0.7
680,034 - AO353_03185 0.13 +0.7
680,356 + AO353_03185 0.56 -0.7
680,356 + AO353_03185 0.56 -1.0
680,356 + AO353_03185 0.56 +1.1
680,357 - AO353_03185 0.56 -0.1
680,402 + AO353_03185 0.62 +0.0
680,403 - AO353_03185 0.62 -2.0
680,403 - AO353_03185 0.62 -0.6
680,403 - AO353_03185 0.62 -0.5
680,403 - AO353_03185 0.62 +0.8
680,483 - AO353_03185 0.72 -0.7
680,569 + AO353_03185 0.84 +0.3
680,569 + AO353_03185 0.84 -0.9
680,569 + AO353_03185 0.84 -0.2
680,691 - -0.9
680,740 + +0.5
680,740 + -0.7
680,763 + -2.0
680,788 + AO353_03190 0.11 -0.7
680,789 - AO353_03190 0.11 -2.3
680,789 - AO353_03190 0.11 +0.3
680,800 + AO353_03190 0.14 +0.7
680,801 - AO353_03190 0.14 +0.1
680,801 - AO353_03190 0.14 +0.5
680,801 - AO353_03190 0.14 -0.3
680,806 + AO353_03190 0.15 -0.3
680,806 + AO353_03190 0.15 -0.5
680,806 + AO353_03190 0.15 -2.2
680,806 + AO353_03190 0.15 -0.6
680,806 + AO353_03190 0.15 +1.5
680,806 + AO353_03190 0.15 -0.7
680,806 + AO353_03190 0.15 -0.5
680,806 + AO353_03190 0.15 -0.1
680,806 + AO353_03190 0.15 -0.4
680,806 + AO353_03190 0.15 -0.5
680,806 + AO353_03190 0.15 +1.1
680,806 + AO353_03190 0.15 -0.8
680,807 - AO353_03190 0.16 +0.1
680,807 - AO353_03190 0.16 -0.7
680,807 - AO353_03190 0.16 -0.6
680,807 - AO353_03190 0.16 -0.5
680,807 - AO353_03190 0.16 -0.1
680,807 - AO353_03190 0.16 -0.4
680,807 - AO353_03190 0.16 +0.9
680,807 - AO353_03190 0.16 +0.3
680,807 - AO353_03190 0.16 +0.6
680,807 - AO353_03190 0.16 +0.5

Or see this region's nucleotide sequence