Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03025

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03020 and AO353_03025 are separated by 136 nucleotidesAO353_03025 and AO353_03030 are separated by 287 nucleotides AO353_03020: AO353_03020 - arginine N-succinyltransferase, at 640,615 to 641,634 _03020 AO353_03025: AO353_03025 - acetylornithine aminotransferase, at 641,771 to 642,991 _03025 AO353_03030: AO353_03030 - hypothetical protein, at 643,279 to 647,994 _03030 Position (kb) 641 642 643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 640.886 kb on + strand, within AO353_03020at 640.886 kb on + strand, within AO353_03020at 640.886 kb on + strand, within AO353_03020at 640.887 kb on - strand, within AO353_03020at 640.887 kb on - strand, within AO353_03020at 640.887 kb on - strand, within AO353_03020at 640.994 kb on + strand, within AO353_03020at 640.995 kb on - strand, within AO353_03020at 640.995 kb on - strand, within AO353_03020at 640.995 kb on - strand, within AO353_03020at 640.995 kb on - strand, within AO353_03020at 641.069 kb on + strand, within AO353_03020at 641.069 kb on + strand, within AO353_03020at 641.069 kb on + strand, within AO353_03020at 641.069 kb on + strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.255 kb on + strand, within AO353_03020at 641.255 kb on + strand, within AO353_03020at 641.255 kb on + strand, within AO353_03020at 641.255 kb on + strand, within AO353_03020at 641.256 kb on - strand, within AO353_03020at 641.256 kb on - strand, within AO353_03020at 641.256 kb on - strand, within AO353_03020at 641.256 kb on - strand, within AO353_03020at 641.269 kb on + strand, within AO353_03020at 641.269 kb on + strand, within AO353_03020at 641.269 kb on + strand, within AO353_03020at 641.270 kb on - strand, within AO353_03020at 641.319 kb on + strand, within AO353_03020at 641.319 kb on + strand, within AO353_03020at 641.319 kb on + strand, within AO353_03020at 641.319 kb on + strand, within AO353_03020at 641.373 kb on - strand, within AO353_03020at 641.373 kb on - strand, within AO353_03020at 641.373 kb on - strand, within AO353_03020at 641.373 kb on - strand, within AO353_03020at 641.459 kb on + strand, within AO353_03020at 641.460 kb on - strand, within AO353_03020at 641.460 kb on - strand, within AO353_03020at 641.591 kb on - strandat 641.591 kb on - strandat 641.591 kb on - strandat 641.591 kb on - strandat 641.591 kb on - strandat 641.647 kb on + strandat 641.647 kb on + strandat 641.647 kb on + strandat 641.648 kb on - strandat 641.648 kb on - strandat 641.648 kb on - strandat 641.651 kb on + strandat 641.651 kb on + strandat 641.651 kb on + strandat 641.652 kb on - strandat 641.652 kb on - strandat 641.652 kb on - strandat 641.718 kb on + strandat 641.719 kb on - strandat 641.738 kb on - strandat 641.743 kb on + strandat 642.006 kb on + strand, within AO353_03025at 642.006 kb on + strand, within AO353_03025at 642.138 kb on + strand, within AO353_03025at 642.138 kb on + strand, within AO353_03025at 642.138 kb on + strand, within AO353_03025at 642.139 kb on - strand, within AO353_03025at 642.308 kb on + strand, within AO353_03025at 642.309 kb on - strand, within AO353_03025at 642.309 kb on - strand, within AO353_03025at 642.309 kb on - strand, within AO353_03025at 642.309 kb on - strand, within AO353_03025at 642.369 kb on + strand, within AO353_03025at 642.370 kb on - strand, within AO353_03025at 642.422 kb on + strand, within AO353_03025at 642.523 kb on - strand, within AO353_03025at 642.523 kb on - strand, within AO353_03025at 642.597 kb on + strand, within AO353_03025at 642.598 kb on - strand, within AO353_03025at 642.598 kb on - strand, within AO353_03025at 642.598 kb on - strand, within AO353_03025at 642.718 kb on + strand, within AO353_03025at 642.719 kb on - strand, within AO353_03025at 642.827 kb on + strand, within AO353_03025at 642.827 kb on + strand, within AO353_03025at 642.828 kb on - strand, within AO353_03025at 642.828 kb on - strand, within AO353_03025at 642.944 kb on + strandat 642.945 kb on - strandat 643.048 kb on + strandat 643.048 kb on + strandat 643.048 kb on + strandat 643.048 kb on + strandat 643.049 kb on - strandat 643.049 kb on - strandat 643.093 kb on + strandat 643.093 kb on + strandat 643.093 kb on + strandat 643.093 kb on + strandat 643.094 kb on - strandat 643.095 kb on + strandat 643.096 kb on - strandat 643.096 kb on - strandat 643.140 kb on + strandat 643.141 kb on - strandat 643.174 kb on + strandat 643.180 kb on - strandat 643.180 kb on - strandat 643.181 kb on + strandat 643.181 kb on + strandat 643.181 kb on + strandat 643.181 kb on + strandat 643.181 kb on + strandat 643.181 kb on + strandat 643.181 kb on + strandat 643.181 kb on + strandat 643.181 kb on + strandat 643.181 kb on + strandat 643.182 kb on - strandat 643.182 kb on - strandat 643.182 kb on - strandat 643.182 kb on - strandat 643.207 kb on - strandat 643.207 kb on - strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.210 kb on + strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.211 kb on - strandat 643.214 kb on + strandat 643.214 kb on + strandat 643.214 kb on + strandat 643.214 kb on + strandat 643.214 kb on + strandat 643.215 kb on - strandat 643.215 kb on - strandat 643.215 kb on - strandat 643.215 kb on - strandat 643.215 kb on - strandat 643.215 kb on - strandat 643.215 kb on - strandat 643.253 kb on + strandat 643.254 kb on - strandat 643.254 kb on - strandat 643.254 kb on - strandat 643.254 kb on - strandat 643.361 kb on + strandat 643.361 kb on + strandat 643.361 kb on + strandat 643.361 kb on + strandat 643.361 kb on + strandat 643.361 kb on + strandat 643.361 kb on + strandat 643.361 kb on + strandat 643.362 kb on - strandat 643.362 kb on - strandat 643.362 kb on - strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.738 kb on + strandat 643.739 kb on - strandat 643.870 kb on + strand, within AO353_03030at 643.870 kb on + strand, within AO353_03030at 643.870 kb on + strand, within AO353_03030at 643.870 kb on + strand, within AO353_03030at 643.871 kb on - strand, within AO353_03030at 643.883 kb on + strand, within AO353_03030at 643.883 kb on + strand, within AO353_03030at 643.883 kb on + strand, within AO353_03030at 643.884 kb on - strand, within AO353_03030at 643.884 kb on - strand, within AO353_03030at 643.928 kb on + strand, within AO353_03030at 643.929 kb on - strand, within AO353_03030

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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640,886 + AO353_03020 0.27 +0.2
640,886 + AO353_03020 0.27 -0.5
640,886 + AO353_03020 0.27 -0.4
640,887 - AO353_03020 0.27 +0.7
640,887 - AO353_03020 0.27 -1.4
640,887 - AO353_03020 0.27 -0.5
640,994 + AO353_03020 0.37 +0.5
640,995 - AO353_03020 0.37 -0.2
640,995 - AO353_03020 0.37 +0.2
640,995 - AO353_03020 0.37 -0.5
640,995 - AO353_03020 0.37 -0.5
641,069 + AO353_03020 0.45 -2.1
641,069 + AO353_03020 0.45 +0.5
641,069 + AO353_03020 0.45 -0.9
641,069 + AO353_03020 0.45 -0.8
641,070 - AO353_03020 0.45 -1.3
641,070 - AO353_03020 0.45 -0.7
641,070 - AO353_03020 0.45 +0.7
641,070 - AO353_03020 0.45 +1.1
641,070 - AO353_03020 0.45 -1.9
641,255 + AO353_03020 0.63 -0.1
641,255 + AO353_03020 0.63 -1.1
641,255 + AO353_03020 0.63 +0.1
641,255 + AO353_03020 0.63 +0.1
641,256 - AO353_03020 0.63 -0.5
641,256 - AO353_03020 0.63 +0.6
641,256 - AO353_03020 0.63 +0.5
641,256 - AO353_03020 0.63 -1.4
641,269 + AO353_03020 0.64 +0.1
641,269 + AO353_03020 0.64 +0.6
641,269 + AO353_03020 0.64 +0.8
641,270 - AO353_03020 0.64 +0.1
641,319 + AO353_03020 0.69 +1.7
641,319 + AO353_03020 0.69 +1.7
641,319 + AO353_03020 0.69 +0.2
641,319 + AO353_03020 0.69 +0.1
641,373 - AO353_03020 0.74 -2.1
641,373 - AO353_03020 0.74 -0.8
641,373 - AO353_03020 0.74 -0.7
641,373 - AO353_03020 0.74 -1.9
641,459 + AO353_03020 0.83 -0.3
641,460 - AO353_03020 0.83 -0.5
641,460 - AO353_03020 0.83 -0.8
641,591 - -1.8
641,591 - -2.5
641,591 - +0.5
641,591 - -0.7
641,591 - -0.7
641,647 + -1.2
641,647 + -0.5
641,647 + -0.1
641,648 - +0.5
641,648 - -0.9
641,648 - +0.1
641,651 + -0.3
641,651 + +0.5
641,651 + -0.3
641,652 - -0.5
641,652 - -0.4
641,652 - -0.9
641,718 + +0.1
641,719 - +1.1
641,738 - -1.6
641,743 + +0.1
642,006 + AO353_03025 0.19 -1.4
642,006 + AO353_03025 0.19 -0.9
642,138 + AO353_03025 0.30 +1.1
642,138 + AO353_03025 0.30 -2.3
642,138 + AO353_03025 0.30 -1.1
642,139 - AO353_03025 0.30 -1.5
642,308 + AO353_03025 0.44 -0.9
642,309 - AO353_03025 0.44 +0.1
642,309 - AO353_03025 0.44 -1.2
642,309 - AO353_03025 0.44 +0.6
642,309 - AO353_03025 0.44 +0.5
642,369 + AO353_03025 0.49 -0.3
642,370 - AO353_03025 0.49 +0.8
642,422 + AO353_03025 0.53 -1.6
642,523 - AO353_03025 0.62 -0.7
642,523 - AO353_03025 0.62 +0.1
642,597 + AO353_03025 0.68 -0.2
642,598 - AO353_03025 0.68 -0.0
642,598 - AO353_03025 0.68 +0.4
642,598 - AO353_03025 0.68 -1.4
642,718 + AO353_03025 0.78 +0.1
642,719 - AO353_03025 0.78 +0.5
642,827 + AO353_03025 0.86 -0.5
642,827 + AO353_03025 0.86 +1.1
642,828 - AO353_03025 0.87 -1.3
642,828 - AO353_03025 0.87 -1.1
642,944 + -0.3
642,945 - -1.8
643,048 + -0.3
643,048 + +0.5
643,048 + +1.3
643,048 + -0.8
643,049 - -0.9
643,049 - -0.9
643,093 + -0.3
643,093 + +0.4
643,093 + -0.6
643,093 + -0.5
643,094 - -1.5
643,095 + -0.3
643,096 - -0.5
643,096 - -0.1
643,140 + -0.2
643,141 - +0.2
643,174 + -2.1
643,180 - -0.7
643,180 - +1.3
643,181 + -0.3
643,181 + -0.3
643,181 + +1.6
643,181 + +0.7
643,181 + +0.5
643,181 + +0.7
643,181 + -1.1
643,181 + -2.8
643,181 + -0.8
643,181 + +0.5
643,182 - -0.3
643,182 - -0.2
643,182 - -0.2
643,182 - -0.3
643,207 - +0.6
643,207 - +0.2
643,210 + +0.1
643,210 + +0.1
643,210 + +0.5
643,210 + +0.3
643,210 + +0.7
643,210 + -1.9
643,210 + -0.5
643,210 + +0.1
643,210 + -0.3
643,210 + -0.3
643,210 + -0.3
643,211 - +1.4
643,211 - -3.9
643,211 - -0.8
643,211 - +0.5
643,211 - -0.3
643,211 - -0.4
643,211 - -1.2
643,211 - -0.3
643,211 - +1.1
643,211 - +1.6
643,211 - -0.5
643,211 - -2.7
643,211 - -0.1
643,214 + +0.2
643,214 + -0.1
643,214 + -0.3
643,214 + +0.6
643,214 + +1.1
643,215 - -1.9
643,215 - -0.3
643,215 - +0.6
643,215 - +0.6
643,215 - +0.7
643,215 - +2.5
643,215 - -0.3
643,253 + +0.5
643,254 - +0.6
643,254 - +0.4
643,254 - -0.9
643,254 - -0.0
643,361 + -0.3
643,361 + -0.5
643,361 + -2.3
643,361 + -1.0
643,361 + -0.9
643,361 + +0.5
643,361 + -0.3
643,361 + +0.5
643,362 - -0.8
643,362 - -1.0
643,362 - -1.0
643,618 + -2.3
643,618 + -0.8
643,618 + +0.7
643,618 + -0.1
643,618 + -0.2
643,618 + -0.7
643,618 + -1.0
643,618 + +1.1
643,619 - +0.7
643,619 - -0.5
643,619 - +1.3
643,619 - -0.2
643,619 - -0.3
643,619 - -0.2
643,619 - -1.4
643,619 - -0.0
643,619 - +0.9
643,619 - -0.4
643,619 - -1.3
643,619 - +0.3
643,619 - -0.2
643,619 - -0.1
643,619 - +2.1
643,619 - -0.9
643,619 - -1.4
643,619 - -0.1
643,619 - +1.1
643,738 + -0.2
643,739 - -0.2
643,870 + AO353_03030 0.13 -1.5
643,870 + AO353_03030 0.13 -0.9
643,870 + AO353_03030 0.13 -0.8
643,870 + AO353_03030 0.13 -1.9
643,871 - AO353_03030 0.13 -0.7
643,883 + AO353_03030 0.13 -0.8
643,883 + AO353_03030 0.13 -1.7
643,883 + AO353_03030 0.13 +1.6
643,884 - AO353_03030 0.13 +0.8
643,884 - AO353_03030 0.13 -1.3
643,928 + AO353_03030 0.14 -0.5
643,929 - AO353_03030 0.14 +0.7

Or see this region's nucleotide sequence