Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02585 and AO353_02590 are separated by 77 nucleotides AO353_02590 and AO353_02595 are separated by 82 nucleotides AO353_02595 and AO353_02600 are separated by 2 nucleotides
AO353_02585: AO353_02585 - MFS transporter, at 552,699 to 553,907
_02585
AO353_02590: AO353_02590 - MarR family transcriptional regulator, at 553,985 to 554,389
_02590
AO353_02595: AO353_02595 - cobalamin synthase, at 554,472 to 555,203
_02595
AO353_02600: AO353_02600 - alpha-ribazole phosphatase, at 555,206 to 555,781
_02600
Position (kb)
553
554
555 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 552.997 kb on + strand, within AO353_02585 at 552.997 kb on + strand, within AO353_02585 at 552.997 kb on + strand, within AO353_02585 at 552.997 kb on + strand, within AO353_02585 at 552.998 kb on - strand, within AO353_02585 at 552.998 kb on - strand, within AO353_02585 at 552.998 kb on - strand, within AO353_02585 at 552.998 kb on - strand, within AO353_02585 at 552.998 kb on - strand, within AO353_02585 at 552.998 kb on - strand, within AO353_02585 at 552.998 kb on - strand, within AO353_02585 at 553.060 kb on + strand, within AO353_02585 at 553.060 kb on + strand, within AO353_02585 at 553.061 kb on - strand, within AO353_02585 at 553.061 kb on - strand, within AO353_02585 at 553.117 kb on + strand, within AO353_02585 at 553.117 kb on + strand, within AO353_02585 at 553.117 kb on + strand, within AO353_02585 at 553.117 kb on + strand, within AO353_02585 at 553.117 kb on + strand, within AO353_02585 at 553.117 kb on + strand, within AO353_02585 at 553.118 kb on - strand, within AO353_02585 at 553.118 kb on - strand, within AO353_02585 at 553.118 kb on - strand, within AO353_02585 at 553.118 kb on - strand, within AO353_02585 at 553.118 kb on - strand, within AO353_02585 at 553.118 kb on - strand, within AO353_02585 at 553.118 kb on - strand, within AO353_02585 at 553.121 kb on + strand, within AO353_02585 at 553.121 kb on + strand, within AO353_02585 at 553.121 kb on + strand, within AO353_02585 at 553.131 kb on - strand, within AO353_02585 at 553.198 kb on + strand, within AO353_02585 at 553.198 kb on + strand, within AO353_02585 at 553.198 kb on + strand, within AO353_02585 at 553.199 kb on - strand, within AO353_02585 at 553.199 kb on - strand, within AO353_02585 at 553.655 kb on - strand, within AO353_02585 at 553.655 kb on - strand, within AO353_02585 at 553.872 kb on + strand at 553.872 kb on + strand at 553.872 kb on + strand at 553.873 kb on - strand at 553.873 kb on - strand at 553.873 kb on - strand at 553.912 kb on - strand at 553.912 kb on - strand at 553.912 kb on - strand at 553.928 kb on + strand at 553.930 kb on + strand at 553.930 kb on + strand at 553.932 kb on + strand at 553.932 kb on + strand at 553.962 kb on + strand at 553.963 kb on - strand at 553.963 kb on - strand at 553.963 kb on - strand at 553.963 kb on - strand at 553.963 kb on - strand at 554.192 kb on - strand, within AO353_02590 at 554.192 kb on - strand, within AO353_02590 at 554.203 kb on + strand, within AO353_02590 at 554.203 kb on + strand, within AO353_02590 at 554.283 kb on + strand, within AO353_02590 at 554.283 kb on + strand, within AO353_02590 at 554.283 kb on + strand, within AO353_02590 at 554.284 kb on - strand, within AO353_02590 at 554.325 kb on + strand, within AO353_02590 at 554.326 kb on - strand, within AO353_02590 at 554.369 kb on + strand at 554.369 kb on + strand at 554.370 kb on - strand at 554.370 kb on - strand at 554.385 kb on - strand at 554.385 kb on - strand at 554.385 kb on - strand at 554.398 kb on + strand at 554.399 kb on - strand at 554.399 kb on - strand at 554.399 kb on - strand at 554.399 kb on - strand at 554.400 kb on + strand at 554.400 kb on + strand at 554.401 kb on - strand at 554.401 kb on - strand at 554.418 kb on - strand at 554.418 kb on - strand at 554.418 kb on - strand at 554.735 kb on - strand, within AO353_02595 at 554.735 kb on - strand, within AO353_02595 at 554.804 kb on + strand, within AO353_02595 at 554.805 kb on - strand, within AO353_02595 at 554.805 kb on - strand, within AO353_02595 at 554.805 kb on - strand, within AO353_02595 at 555.103 kb on + strand, within AO353_02595 at 555.103 kb on + strand, within AO353_02595 at 555.373 kb on - strand, within AO353_02600 at 555.373 kb on - strand, within AO353_02600 at 555.373 kb on - strand, within AO353_02600 at 555.373 kb on - strand, within AO353_02600 at 555.373 kb on - strand, within AO353_02600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 552,997 + AO353_02585 0.25 -1.3 552,997 + AO353_02585 0.25 +0.4 552,997 + AO353_02585 0.25 +0.7 552,997 + AO353_02585 0.25 +0.0 552,998 - AO353_02585 0.25 +1.0 552,998 - AO353_02585 0.25 -0.3 552,998 - AO353_02585 0.25 +0.9 552,998 - AO353_02585 0.25 +0.1 552,998 - AO353_02585 0.25 -1.0 552,998 - AO353_02585 0.25 +0.1 552,998 - AO353_02585 0.25 -1.1 553,060 + AO353_02585 0.30 -1.0 553,060 + AO353_02585 0.30 -1.1 553,061 - AO353_02585 0.30 +0.2 553,061 - AO353_02585 0.30 -0.5 553,117 + AO353_02585 0.35 -0.5 553,117 + AO353_02585 0.35 +0.7 553,117 + AO353_02585 0.35 +0.3 553,117 + AO353_02585 0.35 -1.7 553,117 + AO353_02585 0.35 -0.3 553,117 + AO353_02585 0.35 +0.2 553,118 - AO353_02585 0.35 +0.4 553,118 - AO353_02585 0.35 -0.8 553,118 - AO353_02585 0.35 +0.4 553,118 - AO353_02585 0.35 -0.9 553,118 - AO353_02585 0.35 -0.6 553,118 - AO353_02585 0.35 +0.0 553,118 - AO353_02585 0.35 -0.1 553,121 + AO353_02585 0.35 +1.0 553,121 + AO353_02585 0.35 +1.0 553,121 + AO353_02585 0.35 -0.6 553,131 - AO353_02585 0.36 +1.0 553,198 + AO353_02585 0.41 -1.5 553,198 + AO353_02585 0.41 -1.8 553,198 + AO353_02585 0.41 +0.1 553,199 - AO353_02585 0.41 -0.6 553,199 - AO353_02585 0.41 +0.4 553,655 - AO353_02585 0.79 +1.2 553,655 - AO353_02585 0.79 -0.3 553,872 + +1.2 553,872 + -2.4 553,872 + +0.5 553,873 - +1.0 553,873 - -1.7 553,873 - -0.9 553,912 - +0.0 553,912 - +0.1 553,912 - -0.8 553,928 + +0.7 553,930 + +1.0 553,930 + +0.1 553,932 + +0.5 553,932 + -2.2 553,962 + -0.2 553,963 - +2.6 553,963 - +0.3 553,963 - +0.4 553,963 - -0.4 553,963 - +0.9 554,192 - AO353_02590 0.51 +0.0 554,192 - AO353_02590 0.51 +0.2 554,203 + AO353_02590 0.54 -0.3 554,203 + AO353_02590 0.54 -1.3 554,283 + AO353_02590 0.74 -1.0 554,283 + AO353_02590 0.74 +0.4 554,283 + AO353_02590 0.74 -1.7 554,284 - AO353_02590 0.74 +0.4 554,325 + AO353_02590 0.84 -0.9 554,326 - AO353_02590 0.84 -0.5 554,369 + -1.2 554,369 + -1.5 554,370 - -0.7 554,370 - -0.4 554,385 - -0.3 554,385 - -1.1 554,385 - +1.0 554,398 + -0.3 554,399 - +0.1 554,399 - -0.2 554,399 - +1.3 554,399 - +0.8 554,400 + +1.0 554,400 + -1.0 554,401 - +0.1 554,401 - +0.6 554,418 - -1.4 554,418 - -0.8 554,418 - -0.1 554,735 - AO353_02595 0.36 +2.0 554,735 - AO353_02595 0.36 +0.4 554,804 + AO353_02595 0.45 +0.1 554,805 - AO353_02595 0.45 +0.8 554,805 - AO353_02595 0.45 -0.6 554,805 - AO353_02595 0.45 -0.3 555,103 + AO353_02595 0.86 -0.3 555,103 + AO353_02595 0.86 -0.5 555,373 - AO353_02600 0.29 +0.2 555,373 - AO353_02600 0.29 +1.4 555,373 - AO353_02600 0.29 -0.2 555,373 - AO353_02600 0.29 +0.4 555,373 - AO353_02600 0.29 -0.3
Or see this region's nucleotide sequence