Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02300

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02295 and AO353_02300 are separated by 82 nucleotidesAO353_02300 and AO353_02305 are separated by 343 nucleotides AO353_02295: AO353_02295 - GntR family transcriptional regulator, at 488,362 to 489,528 _02295 AO353_02300: AO353_02300 - MarR family transcriptional regulator, at 489,611 to 490,054 _02300 AO353_02305: AO353_02305 - guanine permease, at 490,398 to 491,747 _02305 Position (kb) 489 490 491Strain fitness (log2 ratio) -2 -1 0 1 2at 488.825 kb on + strand, within AO353_02295at 488.873 kb on + strand, within AO353_02295at 488.873 kb on + strand, within AO353_02295at 488.874 kb on - strand, within AO353_02295at 488.874 kb on - strand, within AO353_02295at 488.874 kb on - strand, within AO353_02295at 488.874 kb on - strand, within AO353_02295at 489.021 kb on - strand, within AO353_02295at 489.021 kb on - strand, within AO353_02295at 489.059 kb on + strand, within AO353_02295at 489.059 kb on + strand, within AO353_02295at 489.059 kb on + strand, within AO353_02295at 489.059 kb on + strand, within AO353_02295at 489.060 kb on - strand, within AO353_02295at 489.060 kb on - strand, within AO353_02295at 489.060 kb on - strand, within AO353_02295at 489.060 kb on - strand, within AO353_02295at 489.185 kb on + strand, within AO353_02295at 489.185 kb on + strand, within AO353_02295at 489.185 kb on + strand, within AO353_02295at 489.185 kb on + strand, within AO353_02295at 489.186 kb on - strand, within AO353_02295at 489.186 kb on - strand, within AO353_02295at 489.227 kb on + strand, within AO353_02295at 489.227 kb on + strand, within AO353_02295at 489.227 kb on + strand, within AO353_02295at 489.227 kb on + strand, within AO353_02295at 489.227 kb on + strand, within AO353_02295at 489.228 kb on - strand, within AO353_02295at 489.228 kb on - strand, within AO353_02295at 489.366 kb on - strand, within AO353_02295at 489.499 kb on - strandat 489.499 kb on - strandat 489.560 kb on + strandat 489.571 kb on - strandat 489.585 kb on - strandat 489.602 kb on + strandat 489.603 kb on - strandat 489.622 kb on + strandat 489.889 kb on + strand, within AO353_02300at 489.889 kb on + strand, within AO353_02300at 489.889 kb on + strand, within AO353_02300at 490.000 kb on - strand, within AO353_02300at 490.000 kb on - strand, within AO353_02300at 490.000 kb on - strand, within AO353_02300at 490.000 kb on - strand, within AO353_02300at 490.011 kb on + strandat 490.118 kb on - strandat 490.118 kb on - strandat 490.141 kb on - strandat 490.141 kb on - strandat 490.203 kb on + strandat 490.203 kb on + strandat 490.203 kb on + strandat 490.203 kb on + strandat 490.203 kb on + strandat 490.204 kb on - strandat 490.204 kb on - strandat 490.204 kb on - strandat 490.204 kb on - strandat 490.204 kb on - strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.205 kb on + strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.206 kb on - strandat 490.263 kb on - strandat 490.274 kb on + strandat 490.274 kb on + strandat 490.323 kb on + strandat 490.324 kb on - strandat 490.324 kb on - strandat 490.324 kb on - strandat 490.324 kb on - strandat 490.324 kb on - strandat 490.324 kb on - strandat 490.368 kb on + strandat 490.368 kb on + strandat 490.368 kb on + strandat 490.368 kb on + strandat 490.369 kb on - strandat 490.369 kb on - strandat 490.369 kb on - strandat 490.369 kb on - strandat 490.369 kb on - strandat 490.374 kb on + strandat 490.374 kb on + strandat 490.375 kb on - strandat 490.375 kb on - strandat 490.375 kb on - strandat 490.390 kb on + strandat 490.390 kb on + strandat 490.391 kb on - strandat 490.391 kb on - strandat 490.391 kb on - strandat 490.391 kb on - strandat 490.391 kb on - strandat 490.391 kb on - strandat 490.475 kb on + strandat 490.523 kb on + strandat 490.523 kb on + strandat 490.523 kb on + strandat 490.523 kb on + strandat 490.524 kb on - strandat 490.524 kb on - strandat 490.524 kb on - strandat 490.524 kb on - strandat 490.524 kb on - strandat 490.524 kb on - strandat 490.526 kb on + strandat 490.526 kb on + strandat 490.526 kb on + strandat 490.526 kb on + strandat 490.526 kb on + strandat 490.526 kb on + strandat 490.527 kb on - strandat 490.527 kb on - strandat 490.527 kb on - strandat 490.548 kb on + strand, within AO353_02305at 490.548 kb on + strandat 490.548 kb on + strand, within AO353_02305at 490.548 kb on + strand, within AO353_02305at 490.548 kb on + strand, within AO353_02305at 490.548 kb on + strand, within AO353_02305at 490.548 kb on + strand, within AO353_02305at 490.549 kb on - strand, within AO353_02305at 490.549 kb on - strand, within AO353_02305at 490.549 kb on - strand, within AO353_02305at 490.549 kb on - strand, within AO353_02305at 490.549 kb on - strand, within AO353_02305at 490.549 kb on - strand, within AO353_02305at 490.549 kb on - strand, within AO353_02305at 490.549 kb on - strand, within AO353_02305at 490.549 kb on - strand, within AO353_02305at 490.659 kb on + strand, within AO353_02305at 490.660 kb on - strand, within AO353_02305at 490.660 kb on - strand, within AO353_02305at 490.660 kb on - strand, within AO353_02305at 490.712 kb on + strand, within AO353_02305at 490.712 kb on + strand, within AO353_02305at 490.713 kb on - strand, within AO353_02305at 490.716 kb on + strand, within AO353_02305at 490.716 kb on + strand, within AO353_02305at 490.717 kb on - strand, within AO353_02305at 490.717 kb on - strand, within AO353_02305at 490.717 kb on - strand, within AO353_02305at 490.717 kb on - strand, within AO353_02305at 490.717 kb on - strand, within AO353_02305at 490.835 kb on + strand, within AO353_02305at 490.835 kb on + strand, within AO353_02305at 490.835 kb on + strand, within AO353_02305at 490.835 kb on + strand, within AO353_02305at 490.835 kb on + strand, within AO353_02305at 490.835 kb on + strand, within AO353_02305at 490.835 kb on + strand, within AO353_02305at 491.016 kb on + strand, within AO353_02305at 491.016 kb on + strand, within AO353_02305at 491.016 kb on + strand, within AO353_02305at 491.016 kb on + strand, within AO353_02305at 491.017 kb on - strand, within AO353_02305

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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488,825 + AO353_02295 0.40 +0.5
488,873 + AO353_02295 0.44 -0.0
488,873 + AO353_02295 0.44 -0.0
488,874 - AO353_02295 0.44 -1.1
488,874 - AO353_02295 0.44 -0.8
488,874 - AO353_02295 0.44 +0.2
488,874 - AO353_02295 0.44 -0.3
489,021 - AO353_02295 0.56 +1.0
489,021 - AO353_02295 0.56 +0.4
489,059 + AO353_02295 0.60 +0.7
489,059 + AO353_02295 0.60 -1.7
489,059 + AO353_02295 0.60 -1.0
489,059 + AO353_02295 0.60 +1.0
489,060 - AO353_02295 0.60 -1.4
489,060 - AO353_02295 0.60 +1.0
489,060 - AO353_02295 0.60 +0.7
489,060 - AO353_02295 0.60 +0.9
489,185 + AO353_02295 0.71 +1.1
489,185 + AO353_02295 0.71 +0.8
489,185 + AO353_02295 0.71 -0.8
489,185 + AO353_02295 0.71 -1.8
489,186 - AO353_02295 0.71 -0.3
489,186 - AO353_02295 0.71 -0.5
489,227 + AO353_02295 0.74 +0.5
489,227 + AO353_02295 0.74 +1.3
489,227 + AO353_02295 0.74 -0.3
489,227 + AO353_02295 0.74 -0.3
489,227 + AO353_02295 0.74 +0.7
489,228 - AO353_02295 0.74 -1.2
489,228 - AO353_02295 0.74 +0.2
489,366 - AO353_02295 0.86 +0.0
489,499 - -0.0
489,499 - +1.0
489,560 + +2.0
489,571 - -1.1
489,585 - +0.2
489,602 + -0.9
489,603 - -0.8
489,622 + -1.6
489,889 + AO353_02300 0.63 -1.7
489,889 + AO353_02300 0.63 -1.3
489,889 + AO353_02300 0.63 -0.0
490,000 - AO353_02300 0.88 -0.5
490,000 - AO353_02300 0.88 -1.3
490,000 - AO353_02300 0.88 -1.2
490,000 - AO353_02300 0.88 +1.0
490,011 + -2.7
490,118 - +0.1
490,118 - -0.2
490,141 - -1.3
490,141 - +0.2
490,203 + +1.7
490,203 + -0.3
490,203 + -1.0
490,203 + +1.0
490,203 + -0.4
490,204 - -1.3
490,204 - -2.0
490,204 - -0.7
490,204 - +1.0
490,204 - -1.3
490,205 + -1.0
490,205 + -1.0
490,205 + -1.2
490,205 + -2.0
490,205 + -0.8
490,205 + +0.4
490,205 + +0.8
490,205 + +0.2
490,205 + -1.0
490,205 + -1.6
490,205 + +0.2
490,205 + +0.2
490,205 + +0.7
490,206 - +0.1
490,206 - -1.2
490,206 - +0.0
490,206 - -0.5
490,206 - -1.0
490,206 - -1.8
490,206 - -0.2
490,206 - -0.2
490,206 - -1.2
490,206 - -1.3
490,206 - +0.4
490,206 - +0.4
490,206 - +0.5
490,206 - +0.3
490,263 - -0.7
490,274 + +1.0
490,274 + -0.7
490,323 + +0.4
490,324 - +1.0
490,324 - +0.7
490,324 - -1.8
490,324 - -1.5
490,324 - -0.1
490,324 - -0.3
490,368 + +0.1
490,368 + -0.3
490,368 + -0.8
490,368 + +0.3
490,369 - +2.0
490,369 - +0.2
490,369 - -1.3
490,369 - -2.1
490,369 - +0.4
490,374 + +0.4
490,374 + -1.2
490,375 - -0.1
490,375 - +0.0
490,375 - -0.6
490,390 + -0.3
490,390 + -0.9
490,391 - -0.9
490,391 - -0.5
490,391 - +1.0
490,391 - +1.6
490,391 - -1.3
490,391 - +0.4
490,475 + -1.2
490,523 + -0.3
490,523 + +2.0
490,523 + +1.4
490,523 + -0.3
490,524 - -1.1
490,524 - +0.0
490,524 - -0.1
490,524 - +0.2
490,524 - -0.3
490,524 - +1.6
490,526 + -1.0
490,526 + +0.2
490,526 + +0.2
490,526 + -0.6
490,526 + -1.3
490,526 + -0.8
490,527 - -0.7
490,527 - -1.1
490,527 - +0.8
490,548 + AO353_02305 0.11 -0.3
490,548 + +2.0
490,548 + AO353_02305 0.11 +0.8
490,548 + AO353_02305 0.11 +2.0
490,548 + AO353_02305 0.11 -0.8
490,548 + AO353_02305 0.11 +0.8
490,548 + AO353_02305 0.11 -0.0
490,549 - AO353_02305 0.11 +2.4
490,549 - AO353_02305 0.11 -0.4
490,549 - AO353_02305 0.11 -0.7
490,549 - AO353_02305 0.11 +0.4
490,549 - AO353_02305 0.11 -0.6
490,549 - AO353_02305 0.11 +0.8
490,549 - AO353_02305 0.11 -1.0
490,549 - AO353_02305 0.11 -0.7
490,549 - AO353_02305 0.11 -0.7
490,659 + AO353_02305 0.19 +0.4
490,660 - AO353_02305 0.19 -0.1
490,660 - AO353_02305 0.19 +0.2
490,660 - AO353_02305 0.19 +0.4
490,712 + AO353_02305 0.23 -1.3
490,712 + AO353_02305 0.23 -0.5
490,713 - AO353_02305 0.23 -1.3
490,716 + AO353_02305 0.24 +0.9
490,716 + AO353_02305 0.24 +0.7
490,717 - AO353_02305 0.24 -0.6
490,717 - AO353_02305 0.24 +0.4
490,717 - AO353_02305 0.24 -0.9
490,717 - AO353_02305 0.24 +0.4
490,717 - AO353_02305 0.24 -0.8
490,835 + AO353_02305 0.32 +0.7
490,835 + AO353_02305 0.32 -0.1
490,835 + AO353_02305 0.32 -0.3
490,835 + AO353_02305 0.32 -1.3
490,835 + AO353_02305 0.32 -0.6
490,835 + AO353_02305 0.32 -1.2
490,835 + AO353_02305 0.32 -1.0
491,016 + AO353_02305 0.46 +0.7
491,016 + AO353_02305 0.46 +1.7
491,016 + AO353_02305 0.46 +0.2
491,016 + AO353_02305 0.46 -1.3
491,017 - AO353_02305 0.46 +0.7

Or see this region's nucleotide sequence