Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01545 and AO353_01550 are separated by 35 nucleotides AO353_01550 and AO353_01555 are separated by 19 nucleotides AO353_01555 and AO353_01560 are separated by 195 nucleotides
AO353_01545: AO353_01545 - secretin, at 330,191 to 331,432
_01545
AO353_01550: AO353_01550 - hypothetical protein, at 331,468 to 332,178
_01550
AO353_01555: AO353_01555 - hypothetical protein, at 332,198 to 332,470
_01555
AO353_01560: AO353_01560 - type II secretion system protein, at 332,666 to 333,628
_01560
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 330.733 kb on + strand, within AO353_01545 at 330.839 kb on + strand, within AO353_01545 at 330.839 kb on + strand, within AO353_01545 at 330.839 kb on + strand, within AO353_01545 at 330.839 kb on + strand, within AO353_01545 at 330.839 kb on + strand, within AO353_01545 at 330.840 kb on - strand, within AO353_01545 at 330.840 kb on - strand, within AO353_01545 at 330.840 kb on - strand, within AO353_01545 at 330.840 kb on - strand, within AO353_01545 at 330.840 kb on - strand, within AO353_01545 at 330.864 kb on + strand, within AO353_01545 at 330.864 kb on + strand, within AO353_01545 at 330.864 kb on + strand, within AO353_01545 at 330.864 kb on + strand, within AO353_01545 at 330.864 kb on + strand, within AO353_01545 at 330.865 kb on - strand, within AO353_01545 at 330.865 kb on - strand, within AO353_01545 at 330.865 kb on - strand, within AO353_01545 at 330.865 kb on - strand, within AO353_01545 at 330.865 kb on - strand, within AO353_01545 at 330.956 kb on + strand, within AO353_01545 at 330.956 kb on + strand, within AO353_01545 at 330.956 kb on + strand, within AO353_01545 at 330.957 kb on - strand, within AO353_01545 at 330.957 kb on - strand, within AO353_01545 at 330.957 kb on - strand, within AO353_01545 at 331.065 kb on + strand, within AO353_01545 at 331.066 kb on - strand, within AO353_01545 at 331.066 kb on - strand, within AO353_01545 at 331.096 kb on + strand, within AO353_01545 at 331.096 kb on + strand, within AO353_01545 at 331.096 kb on + strand, within AO353_01545 at 331.243 kb on + strand, within AO353_01545 at 331.243 kb on + strand, within AO353_01545 at 331.244 kb on - strand, within AO353_01545 at 331.358 kb on + strand at 331.358 kb on + strand at 331.358 kb on + strand at 331.373 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.378 kb on + strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.379 kb on - strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.382 kb on + strand at 331.383 kb on - strand at 331.383 kb on - strand at 331.383 kb on - strand at 331.383 kb on - strand at 331.383 kb on - strand at 331.383 kb on - strand at 331.383 kb on - strand at 331.383 kb on - strand at 331.451 kb on + strand at 331.451 kb on + strand at 331.451 kb on + strand at 331.452 kb on - strand at 331.481 kb on + strand at 331.481 kb on + strand at 331.481 kb on + strand at 331.481 kb on + strand at 331.482 kb on - strand at 331.482 kb on - strand at 331.482 kb on - strand at 331.482 kb on - strand at 331.545 kb on + strand, within AO353_01550 at 331.545 kb on + strand, within AO353_01550 at 331.545 kb on + strand, within AO353_01550 at 331.546 kb on - strand, within AO353_01550 at 331.546 kb on - strand, within AO353_01550 at 331.546 kb on - strand, within AO353_01550 at 331.612 kb on - strand, within AO353_01550 at 331.621 kb on + strand, within AO353_01550 at 331.729 kb on + strand, within AO353_01550 at 331.729 kb on + strand, within AO353_01550 at 331.730 kb on - strand, within AO353_01550 at 331.730 kb on - strand, within AO353_01550 at 331.730 kb on - strand, within AO353_01550 at 331.747 kb on - strand, within AO353_01550 at 331.807 kb on - strand, within AO353_01550 at 331.933 kb on - strand, within AO353_01550 at 331.933 kb on - strand, within AO353_01550 at 331.999 kb on + strand, within AO353_01550 at 331.999 kb on + strand, within AO353_01550 at 331.999 kb on + strand, within AO353_01550 at 332.000 kb on - strand, within AO353_01550 at 332.147 kb on + strand at 332.147 kb on + strand at 332.147 kb on + strand at 332.148 kb on - strand at 332.176 kb on + strand at 332.176 kb on + strand at 332.176 kb on + strand at 332.176 kb on + strand at 332.176 kb on + strand at 332.177 kb on - strand at 332.177 kb on - strand at 332.203 kb on + strand at 332.203 kb on + strand at 332.203 kb on + strand at 332.220 kb on + strand at 332.220 kb on + strand at 332.220 kb on + strand at 332.220 kb on + strand at 332.220 kb on + strand at 332.221 kb on - strand at 332.221 kb on - strand at 332.221 kb on - strand at 332.221 kb on - strand at 332.314 kb on - strand, within AO353_01555 at 332.501 kb on + strand at 332.502 kb on - strand at 332.558 kb on + strand at 332.558 kb on + strand at 332.558 kb on + strand at 332.558 kb on + strand at 332.559 kb on - strand at 332.559 kb on - strand at 332.566 kb on + strand at 332.566 kb on + strand at 332.602 kb on + strand at 332.602 kb on + strand at 332.603 kb on - strand at 332.603 kb on - strand at 332.603 kb on - strand at 332.603 kb on - strand at 332.603 kb on - strand at 332.662 kb on + strand at 332.662 kb on + strand at 332.662 kb on + strand at 332.663 kb on - strand at 332.663 kb on - strand at 332.663 kb on - strand at 332.753 kb on + strand at 332.754 kb on - strand at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.826 kb on + strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 332.827 kb on - strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.150 kb on + strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560 at 333.151 kb on - strand, within AO353_01560
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 330,733 + AO353_01545 0.44 +0.0 330,839 + AO353_01545 0.52 +0.1 330,839 + AO353_01545 0.52 +0.2 330,839 + AO353_01545 0.52 -1.2 330,839 + AO353_01545 0.52 -0.9 330,839 + AO353_01545 0.52 +0.6 330,840 - AO353_01545 0.52 +0.7 330,840 - AO353_01545 0.52 -1.7 330,840 - AO353_01545 0.52 -0.5 330,840 - AO353_01545 0.52 -1.1 330,840 - AO353_01545 0.52 -0.3 330,864 + AO353_01545 0.54 -1.5 330,864 + AO353_01545 0.54 -1.3 330,864 + AO353_01545 0.54 +0.2 330,864 + AO353_01545 0.54 -1.0 330,864 + AO353_01545 0.54 -0.1 330,865 - AO353_01545 0.54 -1.7 330,865 - AO353_01545 0.54 -0.4 330,865 - AO353_01545 0.54 +0.6 330,865 - AO353_01545 0.54 +0.2 330,865 - AO353_01545 0.54 +0.7 330,956 + AO353_01545 0.62 +0.1 330,956 + AO353_01545 0.62 +1.0 330,956 + AO353_01545 0.62 +0.3 330,957 - AO353_01545 0.62 -0.1 330,957 - AO353_01545 0.62 +0.3 330,957 - AO353_01545 0.62 +0.3 331,065 + AO353_01545 0.70 +0.2 331,066 - AO353_01545 0.70 +1.9 331,066 - AO353_01545 0.70 +1.5 331,096 + AO353_01545 0.73 -1.3 331,096 + AO353_01545 0.73 -0.4 331,096 + AO353_01545 0.73 -0.5 331,243 + AO353_01545 0.85 -0.1 331,243 + AO353_01545 0.85 -0.8 331,244 - AO353_01545 0.85 -0.8 331,358 + +0.3 331,358 + +0.3 331,358 + +0.6 331,373 + +1.5 331,378 + -0.8 331,378 + +0.3 331,378 + +1.2 331,378 + -0.5 331,378 + -0.4 331,378 + -0.4 331,378 + -0.1 331,378 + -1.5 331,378 + -0.9 331,378 + +0.5 331,378 + +0.2 331,378 + +0.6 331,379 - -0.1 331,379 - -0.1 331,379 - -0.1 331,379 - -0.3 331,379 - -0.1 331,379 - -0.7 331,379 - -0.1 331,379 - -0.8 331,379 - -1.1 331,379 - -0.3 331,379 - +0.3 331,379 - -0.9 331,379 - -0.9 331,379 - +1.9 331,379 - -0.6 331,382 + -1.8 331,382 + +0.1 331,382 + -0.5 331,382 + -0.4 331,382 + +1.6 331,382 + -0.3 331,382 + +0.7 331,382 + -0.5 331,382 + +0.9 331,382 + -0.0 331,382 + -0.1 331,383 - +2.3 331,383 - -0.9 331,383 - +1.9 331,383 - -0.4 331,383 - -1.1 331,383 - +0.1 331,383 - -2.1 331,383 - +0.5 331,451 + +2.9 331,451 + +0.4 331,451 + +0.4 331,452 - +0.2 331,481 + -1.1 331,481 + +0.1 331,481 + +2.9 331,481 + -0.9 331,482 - -0.1 331,482 - +0.0 331,482 - -1.3 331,482 - +0.1 331,545 + AO353_01550 0.11 -0.7 331,545 + AO353_01550 0.11 -0.4 331,545 + AO353_01550 0.11 -0.4 331,546 - AO353_01550 0.11 -0.7 331,546 - AO353_01550 0.11 +1.2 331,546 - AO353_01550 0.11 -1.6 331,612 - AO353_01550 0.20 -0.7 331,621 + AO353_01550 0.22 -0.9 331,729 + AO353_01550 0.37 -1.3 331,729 + AO353_01550 0.37 +0.5 331,730 - AO353_01550 0.37 +0.9 331,730 - AO353_01550 0.37 -0.7 331,730 - AO353_01550 0.37 +0.9 331,747 - AO353_01550 0.39 -0.9 331,807 - AO353_01550 0.48 +0.5 331,933 - AO353_01550 0.65 -0.9 331,933 - AO353_01550 0.65 -2.7 331,999 + AO353_01550 0.75 -1.6 331,999 + AO353_01550 0.75 -0.9 331,999 + AO353_01550 0.75 -0.1 332,000 - AO353_01550 0.75 -2.3 332,147 + -0.3 332,147 + +0.3 332,147 + +0.3 332,148 - +0.6 332,176 + +0.9 332,176 + -1.2 332,176 + +0.2 332,176 + -1.2 332,176 + -0.1 332,177 - -0.1 332,177 - -0.8 332,203 + +0.7 332,203 + +0.1 332,203 + -0.4 332,220 + -1.0 332,220 + +0.4 332,220 + +0.5 332,220 + -0.8 332,220 + +0.7 332,221 - -1.2 332,221 - +0.3 332,221 - -1.1 332,221 - -0.1 332,314 - AO353_01555 0.42 +0.7 332,501 + +0.9 332,502 - +0.0 332,558 + +1.9 332,558 + +2.3 332,558 + +0.3 332,558 + +0.0 332,559 - -2.3 332,559 - +0.6 332,566 + +0.6 332,566 + +0.3 332,602 + +0.2 332,602 + -1.2 332,603 - -0.4 332,603 - +0.2 332,603 - +0.7 332,603 - +0.3 332,603 - -0.4 332,662 + +1.2 332,662 + -0.9 332,662 + +0.2 332,663 - -0.3 332,663 - -0.9 332,663 - +0.9 332,753 + +0.5 332,754 - -0.5 332,826 + AO353_01560 0.17 -0.9 332,826 + AO353_01560 0.17 +2.9 332,826 + AO353_01560 0.17 -1.8 332,826 + AO353_01560 0.17 -0.8 332,826 + AO353_01560 0.17 +0.2 332,826 + AO353_01560 0.17 -0.0 332,826 + AO353_01560 0.17 -2.0 332,826 + AO353_01560 0.17 -0.5 332,826 + AO353_01560 0.17 -1.3 332,826 + AO353_01560 0.17 +0.3 332,826 + AO353_01560 0.17 -0.7 332,827 - AO353_01560 0.17 -1.3 332,827 - AO353_01560 0.17 +0.3 332,827 - AO353_01560 0.17 +0.4 332,827 - AO353_01560 0.17 +2.2 332,827 - AO353_01560 0.17 +0.2 332,827 - AO353_01560 0.17 -0.9 332,827 - AO353_01560 0.17 +0.3 332,827 - AO353_01560 0.17 +1.9 333,150 + AO353_01560 0.50 -0.3 333,150 + AO353_01560 0.50 -2.8 333,150 + AO353_01560 0.50 +0.3 333,150 + AO353_01560 0.50 +0.9 333,150 + AO353_01560 0.50 -1.2 333,150 + AO353_01560 0.50 -0.4 333,150 + AO353_01560 0.50 -0.3 333,150 + AO353_01560 0.50 -0.7 333,150 + AO353_01560 0.50 -0.5 333,150 + AO353_01560 0.50 -0.7 333,150 + AO353_01560 0.50 +0.6 333,150 + AO353_01560 0.50 +0.3 333,150 + AO353_01560 0.50 -2.4 333,150 + AO353_01560 0.50 -1.5 333,150 + AO353_01560 0.50 -1.4 333,151 - AO353_01560 0.50 -1.4 333,151 - AO353_01560 0.50 +0.1 333,151 - AO353_01560 0.50 -0.3 333,151 - AO353_01560 0.50 -0.1 333,151 - AO353_01560 0.50 -0.8 333,151 - AO353_01560 0.50 -1.5 333,151 - AO353_01560 0.50 +0.0 333,151 - AO353_01560 0.50 +0.9 333,151 - AO353_01560 0.50 -1.0 333,151 - AO353_01560 0.50 -1.3 333,151 - AO353_01560 0.50 +1.9 333,151 - AO353_01560 0.50 +0.0 333,151 - AO353_01560 0.50 -0.5 333,151 - AO353_01560 0.50 -0.1 333,151 - AO353_01560 0.50 +0.5 333,151 - AO353_01560 0.50 +0.7
Or see this region's nucleotide sequence