Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01410

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01405 and AO353_01410 are separated by 740 nucleotidesAO353_01410 and AO353_01415 are separated by 198 nucleotidesAO353_01415 and AO353_01420 overlap by 1 nucleotides AO353_01405: AO353_01405 - 23S rRNA pseudouridylate synthase, at 299,997 to 300,956 _01405 AO353_01410: AO353_01410 - ribonuclease E, at 301,697 to 304,882 _01410 AO353_01415: AO353_01415 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 305,081 to 305,686 _01415 AO353_01420: AO353_01420 - acylaldehyde oxidase, at 305,686 to 308,001 _01420 Position (kb) 301 302 303 304 305Strain fitness (log2 ratio) -2 -1 0 1 2at 300.776 kb on - strand, within AO353_01405at 300.878 kb on + strandat 300.879 kb on - strandat 300.879 kb on - strandat 300.884 kb on + strandat 300.885 kb on - strandat 300.885 kb on - strandat 300.898 kb on + strandat 300.899 kb on - strandat 300.899 kb on - strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.996 kb on + strandat 301.009 kb on + strandat 301.142 kb on + strandat 301.142 kb on + strandat 301.142 kb on + strandat 301.189 kb on + strandat 301.212 kb on + strandat 301.216 kb on + strandat 301.216 kb on + strandat 301.287 kb on + strandat 301.287 kb on + strandat 301.330 kb on + strandat 301.366 kb on + strandat 301.366 kb on + strandat 301.366 kb on + strandat 301.366 kb on + strandat 304.335 kb on + strand, within AO353_01410at 304.347 kb on + strand, within AO353_01410at 304.347 kb on + strand, within AO353_01410at 304.347 kb on + strand, within AO353_01410at 304.347 kb on + strand, within AO353_01410at 304.348 kb on - strand, within AO353_01410at 304.933 kb on + strandat 304.992 kb on + strandat 305.000 kb on + strandat 305.000 kb on + strandat 305.001 kb on - strandat 305.001 kb on - strandat 305.001 kb on - strandat 305.001 kb on - strandat 305.038 kb on + strandat 305.039 kb on - strandat 305.039 kb on - strandat 305.039 kb on - strandat 305.052 kb on - strandat 305.082 kb on + strandat 305.082 kb on + strandat 305.082 kb on + strandat 305.082 kb on + strandat 305.082 kb on + strandat 305.083 kb on - strandat 305.138 kb on + strandat 305.314 kb on + strand, within AO353_01415at 305.314 kb on + strand, within AO353_01415at 305.314 kb on + strand, within AO353_01415at 305.329 kb on + strand, within AO353_01415at 305.330 kb on - strand, within AO353_01415at 305.330 kb on - strand, within AO353_01415at 305.330 kb on - strand, within AO353_01415at 305.330 kb on - strand, within AO353_01415at 305.338 kb on + strand, within AO353_01415at 305.445 kb on + strand, within AO353_01415at 305.445 kb on + strand, within AO353_01415at 305.446 kb on - strand, within AO353_01415at 305.446 kb on - strand, within AO353_01415at 305.446 kb on - strand, within AO353_01415at 305.446 kb on - strand, within AO353_01415at 305.446 kb on - strand, within AO353_01415at 305.446 kb on - strand, within AO353_01415at 305.742 kb on + strandat 305.742 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
300,776 - AO353_01405 0.81 +0.3
300,878 + -0.7
300,879 - +0.4
300,879 - -0.1
300,884 + +0.8
300,885 - -0.3
300,885 - -1.7
300,898 + -0.1
300,899 - +0.0
300,899 - -0.4
300,924 + +0.7
300,924 + -0.1
300,924 + +0.1
300,924 + -0.1
300,924 + +0.3
300,925 - +1.3
300,925 - -0.4
300,925 - -0.7
300,925 - -0.3
300,925 - +1.3
300,925 - -0.4
300,925 - -0.9
300,996 + -0.6
301,009 + -0.8
301,142 + +0.7
301,142 + -0.6
301,142 + +0.6
301,189 + -1.4
301,212 + +0.3
301,216 + -0.1
301,216 + -0.4
301,287 + -0.1
301,287 + -2.4
301,330 + -1.2
301,366 + +0.3
301,366 + -0.7
301,366 + +0.2
301,366 + -0.7
304,335 + AO353_01410 0.83 -0.8
304,347 + AO353_01410 0.83 -1.4
304,347 + AO353_01410 0.83 -0.6
304,347 + AO353_01410 0.83 -0.4
304,347 + AO353_01410 0.83 -1.3
304,348 - AO353_01410 0.83 -1.1
304,933 + -1.3
304,992 + -0.7
305,000 + +0.1
305,000 + +0.1
305,001 - +1.9
305,001 - -0.3
305,001 - -0.9
305,001 - -0.4
305,038 + +1.9
305,039 - -0.2
305,039 - -0.9
305,039 - -1.4
305,052 - +0.4
305,082 + +1.3
305,082 + +0.3
305,082 + -0.3
305,082 + -2.1
305,082 + -0.7
305,083 - +0.5
305,138 + +1.0
305,314 + AO353_01415 0.38 -0.1
305,314 + AO353_01415 0.38 +0.3
305,314 + AO353_01415 0.38 -0.1
305,329 + AO353_01415 0.41 -0.4
305,330 - AO353_01415 0.41 -0.6
305,330 - AO353_01415 0.41 -1.7
305,330 - AO353_01415 0.41 -0.4
305,330 - AO353_01415 0.41 -2.0
305,338 + AO353_01415 0.42 -0.6
305,445 + AO353_01415 0.60 -0.8
305,445 + AO353_01415 0.60 -0.5
305,446 - AO353_01415 0.60 -0.0
305,446 - AO353_01415 0.60 +0.4
305,446 - AO353_01415 0.60 -0.1
305,446 - AO353_01415 0.60 -0.5
305,446 - AO353_01415 0.60 -0.7
305,446 - AO353_01415 0.60 -0.4
305,742 + -0.4
305,742 + -0.1

Or see this region's nucleotide sequence