Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01405 and AO353_01410 are separated by 740 nucleotides AO353_01410 and AO353_01415 are separated by 198 nucleotides AO353_01415 and AO353_01420 overlap by 1 nucleotides
AO353_01405: AO353_01405 - 23S rRNA pseudouridylate synthase, at 299,997 to 300,956
_01405
AO353_01410: AO353_01410 - ribonuclease E, at 301,697 to 304,882
_01410
AO353_01415: AO353_01415 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 305,081 to 305,686
_01415
AO353_01420: AO353_01420 - acylaldehyde oxidase, at 305,686 to 308,001
_01420
Position (kb) 301
302
303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 300.776 kb on - strand, within AO353_01405 at 300.878 kb on + strand at 300.879 kb on - strand at 300.879 kb on - strand at 300.884 kb on + strand at 300.885 kb on - strand at 300.885 kb on - strand at 300.898 kb on + strand at 300.899 kb on - strand at 300.899 kb on - strand at 300.924 kb on + strand at 300.924 kb on + strand at 300.924 kb on + strand at 300.924 kb on + strand at 300.924 kb on + strand at 300.925 kb on - strand at 300.925 kb on - strand at 300.925 kb on - strand at 300.925 kb on - strand at 300.925 kb on - strand at 300.925 kb on - strand at 300.925 kb on - strand at 300.996 kb on + strand at 301.009 kb on + strand at 301.142 kb on + strand at 301.142 kb on + strand at 301.142 kb on + strand at 301.189 kb on + strand at 301.212 kb on + strand at 301.216 kb on + strand at 301.216 kb on + strand at 301.287 kb on + strand at 301.287 kb on + strand at 301.330 kb on + strand at 301.366 kb on + strand at 301.366 kb on + strand at 301.366 kb on + strand at 301.366 kb on + strand at 304.335 kb on + strand, within AO353_01410 at 304.347 kb on + strand, within AO353_01410 at 304.347 kb on + strand, within AO353_01410 at 304.347 kb on + strand, within AO353_01410 at 304.347 kb on + strand, within AO353_01410 at 304.348 kb on - strand, within AO353_01410 at 304.933 kb on + strand at 304.992 kb on + strand at 305.000 kb on + strand at 305.000 kb on + strand at 305.001 kb on - strand at 305.001 kb on - strand at 305.001 kb on - strand at 305.001 kb on - strand at 305.038 kb on + strand at 305.039 kb on - strand at 305.039 kb on - strand at 305.039 kb on - strand at 305.052 kb on - strand at 305.082 kb on + strand at 305.082 kb on + strand at 305.082 kb on + strand at 305.082 kb on + strand at 305.082 kb on + strand at 305.083 kb on - strand at 305.138 kb on + strand at 305.314 kb on + strand, within AO353_01415 at 305.314 kb on + strand, within AO353_01415 at 305.314 kb on + strand, within AO353_01415 at 305.329 kb on + strand, within AO353_01415 at 305.330 kb on - strand, within AO353_01415 at 305.330 kb on - strand, within AO353_01415 at 305.330 kb on - strand, within AO353_01415 at 305.330 kb on - strand, within AO353_01415 at 305.338 kb on + strand, within AO353_01415 at 305.445 kb on + strand, within AO353_01415 at 305.445 kb on + strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.446 kb on - strand, within AO353_01415 at 305.742 kb on + strand at 305.742 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 300,776 - AO353_01405 0.81 +0.3 300,878 + -0.7 300,879 - +0.4 300,879 - -0.1 300,884 + +0.8 300,885 - -0.3 300,885 - -1.7 300,898 + -0.1 300,899 - +0.0 300,899 - -0.4 300,924 + +0.7 300,924 + -0.1 300,924 + +0.1 300,924 + -0.1 300,924 + +0.3 300,925 - +1.3 300,925 - -0.4 300,925 - -0.7 300,925 - -0.3 300,925 - +1.3 300,925 - -0.4 300,925 - -0.9 300,996 + -0.6 301,009 + -0.8 301,142 + +0.7 301,142 + -0.6 301,142 + +0.6 301,189 + -1.4 301,212 + +0.3 301,216 + -0.1 301,216 + -0.4 301,287 + -0.1 301,287 + -2.4 301,330 + -1.2 301,366 + +0.3 301,366 + -0.7 301,366 + +0.2 301,366 + -0.7 304,335 + AO353_01410 0.83 -0.8 304,347 + AO353_01410 0.83 -1.4 304,347 + AO353_01410 0.83 -0.6 304,347 + AO353_01410 0.83 -0.4 304,347 + AO353_01410 0.83 -1.3 304,348 - AO353_01410 0.83 -1.1 304,933 + -1.3 304,992 + -0.7 305,000 + +0.1 305,000 + +0.1 305,001 - +1.9 305,001 - -0.3 305,001 - -0.9 305,001 - -0.4 305,038 + +1.9 305,039 - -0.2 305,039 - -0.9 305,039 - -1.4 305,052 - +0.4 305,082 + +1.3 305,082 + +0.3 305,082 + -0.3 305,082 + -2.1 305,082 + -0.7 305,083 - +0.5 305,138 + +1.0 305,314 + AO353_01415 0.38 -0.1 305,314 + AO353_01415 0.38 +0.3 305,314 + AO353_01415 0.38 -0.1 305,329 + AO353_01415 0.41 -0.4 305,330 - AO353_01415 0.41 -0.6 305,330 - AO353_01415 0.41 -1.7 305,330 - AO353_01415 0.41 -0.4 305,330 - AO353_01415 0.41 -2.0 305,338 + AO353_01415 0.42 -0.6 305,445 + AO353_01415 0.60 -0.8 305,445 + AO353_01415 0.60 -0.5 305,446 - AO353_01415 0.60 -0.0 305,446 - AO353_01415 0.60 +0.4 305,446 - AO353_01415 0.60 -0.1 305,446 - AO353_01415 0.60 -0.5 305,446 - AO353_01415 0.60 -0.7 305,446 - AO353_01415 0.60 -0.4 305,742 + -0.4 305,742 + -0.1
Or see this region's nucleotide sequence