Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01045

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01035 and AO353_01040 are separated by 265 nucleotidesAO353_01040 and AO353_01045 are separated by 35 nucleotidesAO353_01045 and AO353_01050 are separated by 251 nucleotides AO353_01035: AO353_01035 - hypothetical protein, at 227,927 to 228,136 _01035 AO353_01040: AO353_01040 - polyhydroxyalkanoate synthesis regulator, at 228,402 to 228,935 _01040 AO353_01045: AO353_01045 - phasin, at 228,971 to 229,534 _01045 AO353_01050: AO353_01050 - poly(3-hydroxyalkanoate) synthetase, at 229,786 to 232,104 _01050 Position (kb) 228 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 228.026 kb on + strand, within AO353_01035at 228.027 kb on - strand, within AO353_01035at 228.027 kb on - strand, within AO353_01035at 228.027 kb on - strand, within AO353_01035at 228.083 kb on + strand, within AO353_01035at 228.083 kb on + strand, within AO353_01035at 228.083 kb on + strand, within AO353_01035at 228.122 kb on - strandat 228.297 kb on + strandat 228.297 kb on + strandat 228.298 kb on - strandat 228.298 kb on - strandat 228.298 kb on - strandat 228.357 kb on + strandat 228.358 kb on - strandat 228.358 kb on - strandat 228.358 kb on - strandat 228.362 kb on + strandat 228.363 kb on - strandat 228.363 kb on - strandat 228.363 kb on - strandat 228.373 kb on + strandat 228.373 kb on + strandat 228.374 kb on - strandat 228.374 kb on - strandat 228.393 kb on + strandat 228.393 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.410 kb on + strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.411 kb on - strandat 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strandat 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.460 kb on + strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.461 kb on - strand, within AO353_01040at 228.462 kb on + strand, within AO353_01040at 228.462 kb on + strand, within AO353_01040at 228.462 kb on + strand, within AO353_01040at 228.462 kb on + strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.463 kb on - strand, within AO353_01040at 228.502 kb on + strand, within AO353_01040at 228.502 kb on + strand, within AO353_01040at 228.503 kb on - strand, within AO353_01040at 228.503 kb on - strand, within AO353_01040at 228.503 kb on - strand, within AO353_01040at 228.503 kb on - strand, within AO353_01040at 228.522 kb on - strand, within AO353_01040at 228.522 kb on - strand, within AO353_01040at 228.575 kb on + strandat 228.575 kb on + strand, within AO353_01040at 228.575 kb on + strand, within AO353_01040at 228.576 kb on - strand, within AO353_01040at 228.660 kb on + strand, within AO353_01040at 228.660 kb on + strand, within AO353_01040at 228.660 kb on + strand, within AO353_01040at 228.660 kb on + strand, within AO353_01040at 228.661 kb on - strand, within AO353_01040at 228.661 kb on - strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.690 kb on + strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.691 kb on - strand, within AO353_01040at 228.698 kb on + strand, within AO353_01040at 228.699 kb on - strand, within AO353_01040at 228.813 kb on + strand, within AO353_01040at 228.813 kb on + strand, within AO353_01040at 228.813 kb on + strand, within AO353_01040at 228.814 kb on - strand, within AO353_01040at 228.814 kb on - strand, within AO353_01040at 228.837 kb on + strand, within AO353_01040at 228.837 kb on + strand, within AO353_01040at 228.837 kb on + strand, within AO353_01040at 228.838 kb on - strand, within AO353_01040at 228.933 kb on + strandat 228.934 kb on - strandat 228.962 kb on + strandat 228.962 kb on + strandat 228.963 kb on - strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.972 kb on + strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 228.973 kb on - strandat 229.070 kb on + strand, within AO353_01045at 229.304 kb on + strand, within AO353_01045at 229.304 kb on + strandat 229.305 kb on - strand, within AO353_01045at 229.305 kb on - strand, within AO353_01045at 229.305 kb on - strand, within AO353_01045at 229.305 kb on - strand, within AO353_01045at 229.305 kb on - strand, within AO353_01045at 229.305 kb on - strandat 229.305 kb on - strandat 229.484 kb on + strandat 229.484 kb on + strandat 229.484 kb on + strandat 229.484 kb on + strandat 229.484 kb on + strandat 229.484 kb on + strandat 229.484 kb on + strandat 229.485 kb on - strandat 229.485 kb on - strandat 229.485 kb on - strandat 229.485 kb on - strandat 229.485 kb on - strandat 229.485 kb on - strandat 229.485 kb on - strandat 229.566 kb on + strandat 229.566 kb on + strandat 229.607 kb on + strandat 229.608 kb on - strandat 229.613 kb on + strandat 229.613 kb on + strandat 229.614 kb on - strandat 229.614 kb on - strandat 229.614 kb on - strandat 229.616 kb on + strandat 229.687 kb on + strandat 229.696 kb on + strandat 229.696 kb on + strandat 229.696 kb on + strandat 229.697 kb on - strandat 229.697 kb on - strandat 229.697 kb on - strandat 229.697 kb on - strandat 229.697 kb on - strandat 229.697 kb on - strandat 229.768 kb on + strandat 229.769 kb on - strandat 229.769 kb on - strandat 229.769 kb on - strandat 229.800 kb on + strandat 229.800 kb on + strandat 229.800 kb on + strandat 229.801 kb on - strandat 229.801 kb on - strandat 229.801 kb on - strandat 229.803 kb on + strandat 229.803 kb on + strandat 229.803 kb on + strandat 229.803 kb on + strandat 229.804 kb on - strandat 229.804 kb on - strandat 229.816 kb on + strandat 229.816 kb on + strandat 229.816 kb on + strandat 229.817 kb on - strandat 229.817 kb on - strandat 229.818 kb on + strandat 229.818 kb on + strandat 229.879 kb on - strandat 229.959 kb on + strandat 229.959 kb on + strandat 229.959 kb on + strandat 229.959 kb on + strandat 229.959 kb on + strandat 229.959 kb on + strandat 229.959 kb on + strandat 229.960 kb on - strandat 229.960 kb on - strandat 229.960 kb on - strandat 229.960 kb on - strandat 229.960 kb on - strandat 229.981 kb on + strandat 229.981 kb on + strandat 229.981 kb on + strandat 229.981 kb on + strandat 229.981 kb on + strandat 229.981 kb on + strandat 229.981 kb on + strandat 229.981 kb on + strandat 229.981 kb on + strandat 229.982 kb on - strandat 229.982 kb on - strandat 229.982 kb on - strandat 229.982 kb on - strandat 229.982 kb on - strandat 229.982 kb on - strandat 229.982 kb on - strandat 229.982 kb on - strandat 229.982 kb on - strandat 230.047 kb on - strand, within AO353_01050at 230.047 kb on - strand, within AO353_01050at 230.047 kb on - strand, within AO353_01050at 230.140 kb on + strand, within AO353_01050at 230.140 kb on + strand, within AO353_01050at 230.140 kb on + strand, within AO353_01050at 230.140 kb on + strand, within AO353_01050at 230.141 kb on - strand, within AO353_01050at 230.141 kb on - strand, within AO353_01050at 230.141 kb on - strand, within AO353_01050at 230.141 kb on - strand, within AO353_01050at 230.141 kb on - strand, within AO353_01050at 230.265 kb on - strand, within AO353_01050at 230.267 kb on + strand, within AO353_01050at 230.268 kb on - strand, within AO353_01050at 230.268 kb on - strand, within AO353_01050at 230.299 kb on + strand, within AO353_01050at 230.299 kb on + strand, within AO353_01050at 230.299 kb on + strand, within AO353_01050at 230.299 kb on + strand, within AO353_01050at 230.299 kb on + strand, within AO353_01050at 230.299 kb on + strand, within AO353_01050at 230.300 kb on - strand, within AO353_01050at 230.300 kb on - strand, within AO353_01050at 230.300 kb on - strand, within AO353_01050at 230.300 kb on - strand, within AO353_01050at 230.300 kb on - strand, within AO353_01050at 230.421 kb on + strand, within AO353_01050at 230.422 kb on - strand, within AO353_01050at 230.497 kb on - strand, within AO353_01050at 230.518 kb on + strand, within AO353_01050

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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228,026 + AO353_01035 0.47 -1.3
228,027 - AO353_01035 0.48 -0.3
228,027 - AO353_01035 0.48 -1.0
228,027 - AO353_01035 0.48 -0.3
228,083 + AO353_01035 0.74 +0.4
228,083 + AO353_01035 0.74 -3.3
228,083 + AO353_01035 0.74 -1.0
228,122 - -0.8
228,297 + -0.3
228,297 + -0.8
228,298 - -1.3
228,298 - +0.2
228,298 - -0.2
228,357 + +0.0
228,358 - -0.4
228,358 - +0.3
228,358 - +1.3
228,362 + -0.6
228,363 - +0.4
228,363 - +0.5
228,363 - -0.6
228,373 + +0.0
228,373 + -0.7
228,374 - +0.8
228,374 - -1.2
228,393 + -0.2
228,393 + -0.9
228,410 + -0.1
228,410 + +0.2
228,410 + -0.2
228,410 + -0.0
228,410 + -0.4
228,410 + -0.4
228,410 + +0.5
228,411 - -1.3
228,411 - -1.3
228,411 - -0.2
228,411 - -1.5
228,411 - -0.3
228,411 - +0.4
228,411 - -0.3
228,460 + AO353_01040 0.11 +1.2
228,460 + AO353_01040 0.11 +0.6
228,460 + AO353_01040 0.11 -2.3
228,460 + AO353_01040 0.11 +0.5
228,460 + -0.5
228,460 + AO353_01040 0.11 -1.0
228,460 + AO353_01040 0.11 +0.8
228,460 + AO353_01040 0.11 -0.1
228,461 - AO353_01040 0.11 -1.2
228,461 - AO353_01040 0.11 +0.6
228,461 - AO353_01040 0.11 +1.4
228,461 - AO353_01040 0.11 -0.4
228,461 - AO353_01040 0.11 -0.7
228,461 - AO353_01040 0.11 +0.8
228,461 - AO353_01040 0.11 -0.2
228,461 - AO353_01040 0.11 +1.8
228,461 - AO353_01040 0.11 -2.9
228,462 + AO353_01040 0.11 -0.3
228,462 + AO353_01040 0.11 -1.0
228,462 + AO353_01040 0.11 -0.2
228,462 + AO353_01040 0.11 +0.0
228,463 - AO353_01040 0.11 +0.4
228,463 - AO353_01040 0.11 -0.9
228,463 - AO353_01040 0.11 -0.2
228,463 - AO353_01040 0.11 -0.4
228,463 - AO353_01040 0.11 +2.2
228,463 - AO353_01040 0.11 -2.0
228,463 - AO353_01040 0.11 -1.3
228,463 - AO353_01040 0.11 -1.0
228,463 - AO353_01040 0.11 +1.8
228,502 + AO353_01040 0.19 -0.2
228,502 + AO353_01040 0.19 -1.2
228,503 - AO353_01040 0.19 +0.3
228,503 - AO353_01040 0.19 +0.3
228,503 - AO353_01040 0.19 +0.4
228,503 - AO353_01040 0.19 -0.9
228,522 - AO353_01040 0.22 +0.8
228,522 - AO353_01040 0.22 +0.5
228,575 + +0.8
228,575 + AO353_01040 0.32 +0.6
228,575 + AO353_01040 0.32 +0.8
228,576 - AO353_01040 0.33 -1.0
228,660 + AO353_01040 0.48 +0.8
228,660 + AO353_01040 0.48 -2.7
228,660 + AO353_01040 0.48 +0.4
228,660 + AO353_01040 0.48 +1.8
228,661 - AO353_01040 0.49 -2.0
228,661 - AO353_01040 0.49 -1.1
228,690 + AO353_01040 0.54 -0.3
228,690 + AO353_01040 0.54 -0.9
228,690 + AO353_01040 0.54 +1.1
228,690 + AO353_01040 0.54 -0.5
228,690 + AO353_01040 0.54 +0.8
228,690 + AO353_01040 0.54 +0.3
228,691 - AO353_01040 0.54 -1.3
228,691 - AO353_01040 0.54 +1.8
228,691 - AO353_01040 0.54 -0.2
228,691 - AO353_01040 0.54 +0.8
228,691 - AO353_01040 0.54 -0.2
228,698 + AO353_01040 0.55 -0.7
228,699 - AO353_01040 0.56 +0.9
228,813 + AO353_01040 0.77 -1.1
228,813 + AO353_01040 0.77 -0.9
228,813 + AO353_01040 0.77 -0.3
228,814 - AO353_01040 0.77 +0.3
228,814 - AO353_01040 0.77 -0.0
228,837 + AO353_01040 0.81 -0.7
228,837 + AO353_01040 0.81 +0.6
228,837 + AO353_01040 0.81 -2.0
228,838 - AO353_01040 0.82 -0.3
228,933 + +1.5
228,934 - -0.2
228,962 + +0.7
228,962 + +1.8
228,963 - -0.2
228,972 + +0.9
228,972 + +1.3
228,972 + +0.8
228,972 + -0.7
228,972 + -2.3
228,972 + +1.8
228,972 + -0.3
228,972 + -0.2
228,972 + -2.2
228,972 + -0.5
228,972 + -1.0
228,973 - -1.6
228,973 - -1.1
228,973 - +0.3
228,973 - +1.2
228,973 - -0.5
228,973 - +0.0
228,973 - +1.3
228,973 - -1.2
228,973 - -2.1
229,070 + AO353_01045 0.18 +0.0
229,304 + AO353_01045 0.59 +0.0
229,304 + +0.8
229,305 - AO353_01045 0.59 +0.5
229,305 - AO353_01045 0.59 -0.5
229,305 - AO353_01045 0.59 +0.5
229,305 - AO353_01045 0.59 +0.8
229,305 - AO353_01045 0.59 -0.6
229,305 - +1.3
229,305 - +2.8
229,484 + +0.3
229,484 + -0.7
229,484 + -0.5
229,484 + -1.3
229,484 + +0.8
229,484 + -0.5
229,484 + +0.8
229,485 - -0.5
229,485 - -2.3
229,485 - +0.5
229,485 - +0.4
229,485 - -1.7
229,485 - -1.0
229,485 - +0.6
229,566 + +0.8
229,566 + +0.5
229,607 + -0.2
229,608 - -1.0
229,613 + -0.2
229,613 + +2.3
229,614 - -0.3
229,614 - -0.7
229,614 - +0.1
229,616 + +1.8
229,687 + -0.9
229,696 + +0.5
229,696 + -0.2
229,696 + -1.0
229,697 - +0.8
229,697 - +0.0
229,697 - -0.2
229,697 - +0.3
229,697 - +0.3
229,697 - +0.2
229,768 + +1.6
229,769 - +1.1
229,769 - -0.0
229,769 - +1.8
229,800 + +0.3
229,800 + +0.5
229,800 + +1.3
229,801 - +0.4
229,801 - +0.2
229,801 - +0.3
229,803 + +0.4
229,803 + +0.1
229,803 + +2.4
229,803 + -2.2
229,804 - -1.1
229,804 - -0.2
229,816 + -1.1
229,816 + -1.2
229,816 + -0.0
229,817 - +1.0
229,817 - -1.7
229,818 + +0.3
229,818 + +0.0
229,879 - +0.8
229,959 + +0.3
229,959 + -1.1
229,959 + -0.6
229,959 + +0.3
229,959 + -0.7
229,959 + +1.3
229,959 + +0.8
229,960 - -1.0
229,960 - -2.0
229,960 - +0.3
229,960 - -2.3
229,960 - +1.3
229,981 + -0.5
229,981 + +0.8
229,981 + -0.7
229,981 + -0.2
229,981 + +0.5
229,981 + +0.1
229,981 + +0.8
229,981 + -1.6
229,981 + -1.0
229,982 - +0.1
229,982 - -0.3
229,982 - -0.6
229,982 - +0.5
229,982 - +0.5
229,982 - -1.3
229,982 - +0.2
229,982 - -0.3
229,982 - -0.1
230,047 - AO353_01050 0.11 -0.2
230,047 - AO353_01050 0.11 +1.0
230,047 - AO353_01050 0.11 -0.5
230,140 + AO353_01050 0.15 +1.5
230,140 + AO353_01050 0.15 -0.7
230,140 + AO353_01050 0.15 +0.8
230,140 + AO353_01050 0.15 +0.5
230,141 - AO353_01050 0.15 +0.4
230,141 - AO353_01050 0.15 -1.1
230,141 - AO353_01050 0.15 -0.2
230,141 - AO353_01050 0.15 +2.4
230,141 - AO353_01050 0.15 -0.5
230,265 - AO353_01050 0.21 +0.8
230,267 + AO353_01050 0.21 -0.1
230,268 - AO353_01050 0.21 -1.0
230,268 - AO353_01050 0.21 +0.4
230,299 + AO353_01050 0.22 -1.2
230,299 + AO353_01050 0.22 -1.0
230,299 + AO353_01050 0.22 +0.8
230,299 + AO353_01050 0.22 +0.6
230,299 + AO353_01050 0.22 +0.6
230,299 + AO353_01050 0.22 +0.8
230,300 - AO353_01050 0.22 +0.8
230,300 - AO353_01050 0.22 -0.5
230,300 - AO353_01050 0.22 +0.8
230,300 - AO353_01050 0.22 -1.1
230,300 - AO353_01050 0.22 -0.2
230,421 + AO353_01050 0.27 -0.5
230,422 - AO353_01050 0.27 +1.8
230,497 - AO353_01050 0.31 +0.4
230,518 + AO353_01050 0.32 +0.5

Or see this region's nucleotide sequence