Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00590

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00585 and AO353_00590 are separated by 10 nucleotidesAO353_00590 and AO353_00595 are separated by 9 nucleotidesAO353_00595 and AO353_00600 overlap by 4 nucleotides AO353_00585: AO353_00585 - cytochrome C oxidase Cbb3, at 124,447 to 125,871 _00585 AO353_00590: AO353_00590 - cytochrome C oxidase Cbb3, at 125,882 to 126,490 _00590 AO353_00595: AO353_00595 - cytochrome C oxidase, at 126,500 to 126,706 _00595 AO353_00600: AO353_00600 - cytochrome C oxidase Cbb3, at 126,703 to 127,656 _00600 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1 2 3at 124.918 kb on + strand, within AO353_00585at 124.918 kb on + strand, within AO353_00585at 124.918 kb on + strand, within AO353_00585at 124.918 kb on + strand, within AO353_00585at 124.918 kb on + strand, within AO353_00585at 124.919 kb on - strand, within AO353_00585at 124.919 kb on - strand, within AO353_00585at 124.919 kb on - strand, within AO353_00585at 124.919 kb on - strand, within AO353_00585at 124.919 kb on - strand, within AO353_00585at 124.919 kb on - strand, within AO353_00585at 124.919 kb on - strand, within AO353_00585at 125.014 kb on + strand, within AO353_00585at 125.014 kb on + strand, within AO353_00585at 125.014 kb on + strand, within AO353_00585at 125.113 kb on + strand, within AO353_00585at 125.113 kb on + strand, within AO353_00585at 125.113 kb on + strand, within AO353_00585at 125.113 kb on + strand, within AO353_00585at 125.113 kb on + strand, within AO353_00585at 125.113 kb on + strand, within AO353_00585at 125.113 kb on + strand, within AO353_00585at 125.113 kb on + strand, within AO353_00585at 125.113 kb on + strand, within AO353_00585at 125.114 kb on - strand, within AO353_00585at 125.114 kb on - strand, within AO353_00585at 125.114 kb on - strand, within AO353_00585at 125.114 kb on - strand, within AO353_00585at 125.114 kb on - strand, within AO353_00585at 125.116 kb on + strand, within AO353_00585at 125.116 kb on + strand, within AO353_00585at 125.116 kb on + strand, within AO353_00585at 125.117 kb on - strand, within AO353_00585at 125.117 kb on - strand, within AO353_00585at 125.117 kb on - strand, within AO353_00585at 125.117 kb on - strand, within AO353_00585at 125.117 kb on - strand, within AO353_00585at 125.117 kb on - strand, within AO353_00585at 125.150 kb on - strand, within AO353_00585at 125.150 kb on - strand, within AO353_00585at 125.150 kb on - strand, within AO353_00585at 125.150 kb on - strand, within AO353_00585at 125.150 kb on - strand, within AO353_00585at 125.150 kb on - strand, within AO353_00585at 125.197 kb on + strand, within AO353_00585at 125.197 kb on + strand, within AO353_00585at 125.197 kb on + strand, within AO353_00585at 125.197 kb on + strand, within AO353_00585at 125.197 kb on + strand, within AO353_00585at 125.227 kb on + strand, within AO353_00585at 125.227 kb on + strand, within AO353_00585at 125.227 kb on + strand, within AO353_00585at 125.227 kb on + strand, within AO353_00585at 125.227 kb on + strand, within AO353_00585at 125.343 kb on + strand, within AO353_00585at 125.343 kb on + strand, within AO353_00585at 125.343 kb on + strand, within AO353_00585at 125.343 kb on + strand, within AO353_00585at 125.343 kb on + strand, within AO353_00585at 125.343 kb on + strand, within AO353_00585at 125.343 kb on + strand, within AO353_00585at 125.343 kb on + strand, within AO353_00585at 125.344 kb on - strand, within AO353_00585at 125.348 kb on + strand, within AO353_00585at 125.348 kb on + strand, within AO353_00585at 125.348 kb on + strand, within AO353_00585at 125.349 kb on - strand, within AO353_00585at 125.396 kb on - strand, within AO353_00585at 125.458 kb on + strand, within AO353_00585at 125.459 kb on - strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.483 kb on + strand, within AO353_00585at 125.533 kb on + strand, within AO353_00585at 125.533 kb on + strand, within AO353_00585at 125.534 kb on - strand, within AO353_00585at 125.630 kb on - strand, within AO353_00585at 125.630 kb on - strand, within AO353_00585at 125.708 kb on - strand, within AO353_00585at 125.708 kb on - strand, within AO353_00585at 125.746 kb on + strandat 125.746 kb on + strandat 125.746 kb on + strandat 125.747 kb on - strandat 125.747 kb on - strandat 125.803 kb on + strandat 125.803 kb on + strandat 125.803 kb on + strandat 125.804 kb on - strandat 125.804 kb on - strandat 125.804 kb on - strandat 125.804 kb on - strandat 126.023 kb on + strand, within AO353_00590at 126.023 kb on + strand, within AO353_00590at 126.023 kb on + strand, within AO353_00590at 126.024 kb on - strand, within AO353_00590at 126.024 kb on - strand, within AO353_00590at 126.056 kb on + strand, within AO353_00590at 126.056 kb on + strand, within AO353_00590at 126.056 kb on + strand, within AO353_00590at 126.057 kb on - strand, within AO353_00590at 126.057 kb on - strand, within AO353_00590at 126.057 kb on - strand, within AO353_00590at 126.057 kb on - strand, within AO353_00590at 126.057 kb on - strand, within AO353_00590at 126.057 kb on - strand, within AO353_00590at 126.254 kb on + strand, within AO353_00590at 126.255 kb on - strand, within AO353_00590at 126.255 kb on - strand, within AO353_00590at 126.255 kb on - strand, within AO353_00590at 126.377 kb on + strand, within AO353_00590at 126.378 kb on - strand, within AO353_00590at 126.449 kb on + strandat 126.450 kb on - strandat 126.513 kb on + strandat 126.513 kb on + strandat 126.513 kb on + strandat 126.514 kb on - strandat 126.514 kb on - strandat 126.514 kb on - strandat 126.518 kb on - strandat 126.720 kb on + strandat 126.720 kb on + strandat 126.720 kb on + strandat 126.721 kb on - strandat 126.850 kb on + strand, within AO353_00600at 126.850 kb on + strand, within AO353_00600at 126.851 kb on - strand, within AO353_00600at 126.851 kb on - strand, within AO353_00600at 126.851 kb on - strand, within AO353_00600at 126.851 kb on - strand, within AO353_00600at 126.851 kb on - strand, within AO353_00600at 126.851 kb on - strand, within AO353_00600at 126.851 kb on - strand, within AO353_00600at 126.851 kb on - strand, within AO353_00600at 126.957 kb on - strandat 126.957 kb on - strand, within AO353_00600at 126.957 kb on - strand, within AO353_00600at 127.043 kb on - strand, within AO353_00600at 127.043 kb on - strand, within AO353_00600at 127.277 kb on + strand, within AO353_00600at 127.277 kb on + strand, within AO353_00600at 127.277 kb on + strand, within AO353_00600at 127.277 kb on + strand, within AO353_00600at 127.278 kb on - strand, within AO353_00600at 127.278 kb on - strand, within AO353_00600at 127.278 kb on - strand, within AO353_00600at 127.278 kb on - strand, within AO353_00600at 127.278 kb on - strand, within AO353_00600at 127.312 kb on + strand, within AO353_00600at 127.312 kb on + strand, within AO353_00600at 127.312 kb on + strand, within AO353_00600at 127.312 kb on + strand, within AO353_00600at 127.312 kb on + strand, within AO353_00600at 127.313 kb on - strand, within AO353_00600at 127.313 kb on - strand, within AO353_00600at 127.404 kb on - strand, within AO353_00600at 127.480 kb on + strand, within AO353_00600at 127.480 kb on + strand, within AO353_00600at 127.480 kb on + strand, within AO353_00600

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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124,918 + AO353_00585 0.33 +0.1
124,918 + AO353_00585 0.33 -0.5
124,918 + AO353_00585 0.33 -0.7
124,918 + AO353_00585 0.33 +0.9
124,918 + AO353_00585 0.33 -0.8
124,919 - AO353_00585 0.33 +0.3
124,919 - AO353_00585 0.33 -0.7
124,919 - AO353_00585 0.33 +1.0
124,919 - AO353_00585 0.33 -0.2
124,919 - AO353_00585 0.33 -1.0
124,919 - AO353_00585 0.33 +2.8
124,919 - AO353_00585 0.33 +0.8
125,014 + AO353_00585 0.40 +0.6
125,014 + AO353_00585 0.40 -0.2
125,014 + AO353_00585 0.40 +0.6
125,113 + AO353_00585 0.47 +1.5
125,113 + AO353_00585 0.47 -0.3
125,113 + AO353_00585 0.47 +0.5
125,113 + AO353_00585 0.47 +0.4
125,113 + AO353_00585 0.47 +0.3
125,113 + AO353_00585 0.47 -2.4
125,113 + AO353_00585 0.47 -0.8
125,113 + AO353_00585 0.47 -1.4
125,113 + AO353_00585 0.47 -0.8
125,114 - AO353_00585 0.47 -1.4
125,114 - AO353_00585 0.47 -0.8
125,114 - AO353_00585 0.47 -0.1
125,114 - AO353_00585 0.47 -0.5
125,114 - AO353_00585 0.47 +0.9
125,116 + AO353_00585 0.47 -1.5
125,116 + AO353_00585 0.47 -1.8
125,116 + AO353_00585 0.47 -1.0
125,117 - AO353_00585 0.47 +0.2
125,117 - AO353_00585 0.47 +0.8
125,117 - AO353_00585 0.47 +0.5
125,117 - AO353_00585 0.47 -1.0
125,117 - AO353_00585 0.47 -1.5
125,117 - AO353_00585 0.47 +1.4
125,150 - AO353_00585 0.49 -0.8
125,150 - AO353_00585 0.49 -0.8
125,150 - AO353_00585 0.49 -0.5
125,150 - AO353_00585 0.49 -1.3
125,150 - AO353_00585 0.49 -2.7
125,150 - AO353_00585 0.49 -2.4
125,197 + AO353_00585 0.53 +0.5
125,197 + AO353_00585 0.53 -1.0
125,197 + AO353_00585 0.53 +0.6
125,197 + AO353_00585 0.53 +0.1
125,197 + AO353_00585 0.53 -0.2
125,227 + AO353_00585 0.55 +0.5
125,227 + AO353_00585 0.55 -1.3
125,227 + AO353_00585 0.55 -1.4
125,227 + AO353_00585 0.55 -0.2
125,227 + AO353_00585 0.55 -1.9
125,343 + AO353_00585 0.63 +0.1
125,343 + AO353_00585 0.63 -0.0
125,343 + AO353_00585 0.63 -0.5
125,343 + AO353_00585 0.63 +1.8
125,343 + AO353_00585 0.63 -1.2
125,343 + AO353_00585 0.63 +1.0
125,343 + AO353_00585 0.63 -2.1
125,343 + AO353_00585 0.63 -0.0
125,344 - AO353_00585 0.63 -1.2
125,348 + AO353_00585 0.63 +0.2
125,348 + AO353_00585 0.63 -1.8
125,348 + AO353_00585 0.63 -1.8
125,349 - AO353_00585 0.63 -1.2
125,396 - AO353_00585 0.67 -0.2
125,458 + AO353_00585 0.71 -0.1
125,459 - AO353_00585 0.71 +1.0
125,483 + AO353_00585 0.73 +1.5
125,483 + AO353_00585 0.73 +1.0
125,483 + AO353_00585 0.73 -1.8
125,483 + AO353_00585 0.73 +0.2
125,483 + AO353_00585 0.73 +1.6
125,483 + AO353_00585 0.73 -0.2
125,483 + AO353_00585 0.73 +1.2
125,483 + AO353_00585 0.73 +2.8
125,483 + AO353_00585 0.73 +1.1
125,483 + AO353_00585 0.73 +0.6
125,483 + AO353_00585 0.73 +0.8
125,483 + AO353_00585 0.73 +1.2
125,533 + AO353_00585 0.76 -0.0
125,533 + AO353_00585 0.76 -0.7
125,534 - AO353_00585 0.76 -0.8
125,630 - AO353_00585 0.83 +0.2
125,630 - AO353_00585 0.83 -0.8
125,708 - AO353_00585 0.88 +1.1
125,708 - AO353_00585 0.88 -0.4
125,746 + -0.1
125,746 + -1.3
125,746 + -1.0
125,747 - -0.0
125,747 - +1.8
125,803 + -1.2
125,803 + -1.5
125,803 + -0.4
125,804 - +0.8
125,804 - -0.7
125,804 - -0.1
125,804 - +1.1
126,023 + AO353_00590 0.23 -0.2
126,023 + AO353_00590 0.23 -0.4
126,023 + AO353_00590 0.23 +1.6
126,024 - AO353_00590 0.23 +1.2
126,024 - AO353_00590 0.23 -1.3
126,056 + AO353_00590 0.29 +0.5
126,056 + AO353_00590 0.29 +0.3
126,056 + AO353_00590 0.29 -0.2
126,057 - AO353_00590 0.29 +1.3
126,057 - AO353_00590 0.29 +1.4
126,057 - AO353_00590 0.29 +0.4
126,057 - AO353_00590 0.29 -0.9
126,057 - AO353_00590 0.29 -1.2
126,057 - AO353_00590 0.29 -0.5
126,254 + AO353_00590 0.61 -0.5
126,255 - AO353_00590 0.61 -0.5
126,255 - AO353_00590 0.61 +2.1
126,255 - AO353_00590 0.61 -0.7
126,377 + AO353_00590 0.81 +1.1
126,378 - AO353_00590 0.81 -1.4
126,449 + +1.8
126,450 - +0.1
126,513 + +0.8
126,513 + +0.4
126,513 + -0.7
126,514 - -1.2
126,514 - +0.8
126,514 - -0.4
126,518 - +0.2
126,720 + -0.4
126,720 + -0.2
126,720 + -1.4
126,721 - +1.8
126,850 + AO353_00600 0.15 -1.4
126,850 + AO353_00600 0.15 +0.8
126,851 - AO353_00600 0.16 -0.7
126,851 - AO353_00600 0.16 -1.4
126,851 - AO353_00600 0.16 +0.8
126,851 - AO353_00600 0.16 +0.7
126,851 - AO353_00600 0.16 +1.0
126,851 - AO353_00600 0.16 -0.2
126,851 - AO353_00600 0.16 -1.0
126,851 - AO353_00600 0.16 -1.8
126,957 - +0.2
126,957 - AO353_00600 0.27 -1.9
126,957 - AO353_00600 0.27 -1.2
127,043 - AO353_00600 0.36 +0.5
127,043 - AO353_00600 0.36 +0.5
127,277 + AO353_00600 0.60 -1.8
127,277 + AO353_00600 0.60 -1.9
127,277 + AO353_00600 0.60 -0.4
127,277 + AO353_00600 0.60 -0.7
127,278 - AO353_00600 0.60 -0.3
127,278 - AO353_00600 0.60 -0.7
127,278 - AO353_00600 0.60 +0.3
127,278 - AO353_00600 0.60 +0.8
127,278 - AO353_00600 0.60 -0.8
127,312 + AO353_00600 0.64 +0.0
127,312 + AO353_00600 0.64 +0.1
127,312 + AO353_00600 0.64 +0.6
127,312 + AO353_00600 0.64 -0.6
127,312 + AO353_00600 0.64 -0.5
127,313 - AO353_00600 0.64 +1.1
127,313 - AO353_00600 0.64 -0.3
127,404 - AO353_00600 0.73 -0.2
127,480 + AO353_00600 0.81 +0.4
127,480 + AO353_00600 0.81 +1.2
127,480 + AO353_00600 0.81 +0.1

Or see this region's nucleotide sequence