Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00455 and AO353_00460 are separated by 197 nucleotides AO353_00460 and AO353_00465 are separated by 252 nucleotides AO353_00465 and AO353_00470 are separated by 10 nucleotides
AO353_00455: AO353_00455 - beta-hexosaminidase, at 92,743 to 93,753
_00455
AO353_00460: AO353_00460 - TetR family transcriptional regulator, at 93,951 to 94,658
_00460
AO353_00465: AO353_00465 - LexA family transcriptional regulator, at 94,911 to 95,519
_00465
AO353_00470: AO353_00470 - CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase, at 95,530 to 96,003
_00470
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 93.037 kb on + strand, within AO353_00455 at 93.038 kb on - strand, within AO353_00455 at 93.107 kb on + strand, within AO353_00455 at 93.467 kb on + strand, within AO353_00455 at 93.468 kb on - strand, within AO353_00455 at 93.840 kb on - strand at 93.843 kb on - strand at 93.864 kb on - strand at 93.910 kb on + strand at 93.924 kb on + strand at 93.924 kb on + strand at 93.924 kb on + strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.925 kb on - strand at 93.952 kb on + strand at 93.953 kb on - strand at 93.953 kb on - strand at 93.953 kb on - strand at 93.953 kb on - strand at 94.209 kb on - strand, within AO353_00460 at 94.241 kb on - strand, within AO353_00460 at 94.241 kb on - strand, within AO353_00460 at 94.252 kb on - strand, within AO353_00460 at 94.262 kb on - strand, within AO353_00460 at 94.262 kb on - strand, within AO353_00460 at 94.262 kb on - strand, within AO353_00460 at 94.262 kb on - strand, within AO353_00460 at 94.335 kb on - strand, within AO353_00460 at 94.693 kb on + strand at 94.693 kb on + strand at 94.693 kb on + strand at 94.694 kb on - strand at 94.694 kb on - strand at 94.694 kb on - strand at 94.694 kb on - strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.752 kb on + strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.753 kb on - strand at 94.756 kb on + strand at 94.756 kb on + strand at 94.757 kb on - strand at 94.757 kb on - strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.762 kb on + strand at 94.763 kb on - strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.788 kb on + strand at 94.789 kb on - strand at 94.789 kb on - strand at 94.789 kb on - strand at 94.812 kb on + strand at 94.813 kb on - strand at 94.813 kb on - strand at 94.813 kb on - strand at 94.836 kb on + strand at 94.836 kb on + strand at 94.836 kb on + strand at 94.870 kb on - strand at 94.871 kb on + strand at 94.871 kb on + strand at 94.873 kb on + strand at 94.873 kb on + strand at 95.518 kb on - strand at 95.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 93,037 + AO353_00455 0.29 +1.0 93,038 - AO353_00455 0.29 -0.5 93,107 + AO353_00455 0.36 +0.1 93,467 + AO353_00455 0.72 -0.4 93,468 - AO353_00455 0.72 -0.0 93,840 - -1.2 93,843 - -0.4 93,864 - -0.5 93,910 + -1.4 93,924 + -0.8 93,924 + +0.8 93,924 + -0.4 93,925 - +0.4 93,925 - -0.2 93,925 - -0.0 93,925 - -1.0 93,925 - +0.1 93,925 - -2.5 93,952 + +0.1 93,953 - +0.2 93,953 - -0.7 93,953 - -1.2 93,953 - +0.6 94,209 - AO353_00460 0.36 -0.4 94,241 - AO353_00460 0.41 +0.8 94,241 - AO353_00460 0.41 -0.5 94,252 - AO353_00460 0.43 +2.1 94,262 - AO353_00460 0.44 +0.2 94,262 - AO353_00460 0.44 +0.6 94,262 - AO353_00460 0.44 +0.5 94,262 - AO353_00460 0.44 -0.0 94,335 - AO353_00460 0.54 +0.2 94,693 + +0.1 94,693 + -1.2 94,693 + -1.0 94,694 - +0.5 94,694 - -0.3 94,694 - -3.0 94,694 - -0.5 94,752 + +0.5 94,752 + -1.4 94,752 + +0.5 94,752 + -1.5 94,752 + -0.7 94,752 + +0.2 94,752 + -0.5 94,752 + +0.2 94,752 + -0.4 94,752 + -0.7 94,753 - +1.8 94,753 - -0.1 94,753 - +0.8 94,753 - -0.4 94,753 - -1.4 94,753 - -0.8 94,753 - -0.2 94,756 + -0.8 94,756 + -0.4 94,757 - -1.2 94,757 - +1.2 94,762 + -0.2 94,762 + -0.5 94,762 + -0.0 94,762 + -0.8 94,762 + +0.6 94,762 + -1.3 94,762 + -0.5 94,763 - -0.3 94,788 + +0.5 94,788 + -1.4 94,788 + -1.0 94,788 + -0.1 94,788 + +0.2 94,789 - -0.0 94,789 - -0.0 94,789 - +0.2 94,812 + -0.4 94,813 - -0.5 94,813 - -0.5 94,813 - +0.2 94,836 + -1.0 94,836 + +0.4 94,836 + +1.2 94,870 - +0.5 94,871 + -0.5 94,871 + -1.0 94,873 + +1.1 94,873 + -1.4 95,518 - -1.0 95,530 - -1.3
Or see this region's nucleotide sequence