Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00460

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_00455 and AO353_00460 are separated by 197 nucleotidesAO353_00460 and AO353_00465 are separated by 252 nucleotidesAO353_00465 and AO353_00470 are separated by 10 nucleotides AO353_00455: AO353_00455 - beta-hexosaminidase, at 92,743 to 93,753 _00455 AO353_00460: AO353_00460 - TetR family transcriptional regulator, at 93,951 to 94,658 _00460 AO353_00465: AO353_00465 - LexA family transcriptional regulator, at 94,911 to 95,519 _00465 AO353_00470: AO353_00470 - CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase, at 95,530 to 96,003 _00470 Position (kb) 93 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 93.037 kb on + strand, within AO353_00455at 93.038 kb on - strand, within AO353_00455at 93.107 kb on + strand, within AO353_00455at 93.467 kb on + strand, within AO353_00455at 93.468 kb on - strand, within AO353_00455at 93.840 kb on - strandat 93.843 kb on - strandat 93.864 kb on - strandat 93.910 kb on + strandat 93.924 kb on + strandat 93.924 kb on + strandat 93.924 kb on + strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.925 kb on - strandat 93.952 kb on + strandat 93.953 kb on - strandat 93.953 kb on - strandat 93.953 kb on - strandat 93.953 kb on - strandat 94.209 kb on - strand, within AO353_00460at 94.241 kb on - strand, within AO353_00460at 94.241 kb on - strand, within AO353_00460at 94.252 kb on - strand, within AO353_00460at 94.262 kb on - strand, within AO353_00460at 94.262 kb on - strand, within AO353_00460at 94.262 kb on - strand, within AO353_00460at 94.262 kb on - strand, within AO353_00460at 94.335 kb on - strand, within AO353_00460at 94.693 kb on + strandat 94.693 kb on + strandat 94.693 kb on + strandat 94.694 kb on - strandat 94.694 kb on - strandat 94.694 kb on - strandat 94.694 kb on - strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.752 kb on + strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.753 kb on - strandat 94.756 kb on + strandat 94.756 kb on + strandat 94.757 kb on - strandat 94.757 kb on - strandat 94.762 kb on + strandat 94.762 kb on + strandat 94.762 kb on + strandat 94.762 kb on + strandat 94.762 kb on + strandat 94.762 kb on + strandat 94.762 kb on + strandat 94.763 kb on - strandat 94.788 kb on + strandat 94.788 kb on + strandat 94.788 kb on + strandat 94.788 kb on + strandat 94.788 kb on + strandat 94.789 kb on - strandat 94.789 kb on - strandat 94.789 kb on - strandat 94.812 kb on + strandat 94.813 kb on - strandat 94.813 kb on - strandat 94.813 kb on - strandat 94.836 kb on + strandat 94.836 kb on + strandat 94.836 kb on + strandat 94.870 kb on - strandat 94.871 kb on + strandat 94.871 kb on + strandat 94.873 kb on + strandat 94.873 kb on + strandat 95.518 kb on - strandat 95.530 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
93,037 + AO353_00455 0.29 +1.0
93,038 - AO353_00455 0.29 -0.5
93,107 + AO353_00455 0.36 +0.1
93,467 + AO353_00455 0.72 -0.4
93,468 - AO353_00455 0.72 -0.0
93,840 - -1.2
93,843 - -0.4
93,864 - -0.5
93,910 + -1.4
93,924 + -0.8
93,924 + +0.8
93,924 + -0.4
93,925 - +0.4
93,925 - -0.2
93,925 - -0.0
93,925 - -1.0
93,925 - +0.1
93,925 - -2.5
93,952 + +0.1
93,953 - +0.2
93,953 - -0.7
93,953 - -1.2
93,953 - +0.6
94,209 - AO353_00460 0.36 -0.4
94,241 - AO353_00460 0.41 +0.8
94,241 - AO353_00460 0.41 -0.5
94,252 - AO353_00460 0.43 +2.1
94,262 - AO353_00460 0.44 +0.2
94,262 - AO353_00460 0.44 +0.6
94,262 - AO353_00460 0.44 +0.5
94,262 - AO353_00460 0.44 -0.0
94,335 - AO353_00460 0.54 +0.2
94,693 + +0.1
94,693 + -1.2
94,693 + -1.0
94,694 - +0.5
94,694 - -0.3
94,694 - -3.0
94,694 - -0.5
94,752 + +0.5
94,752 + -1.4
94,752 + +0.5
94,752 + -1.5
94,752 + -0.7
94,752 + +0.2
94,752 + -0.5
94,752 + +0.2
94,752 + -0.4
94,752 + -0.7
94,753 - +1.8
94,753 - -0.1
94,753 - +0.8
94,753 - -0.4
94,753 - -1.4
94,753 - -0.8
94,753 - -0.2
94,756 + -0.8
94,756 + -0.4
94,757 - -1.2
94,757 - +1.2
94,762 + -0.2
94,762 + -0.5
94,762 + -0.0
94,762 + -0.8
94,762 + +0.6
94,762 + -1.3
94,762 + -0.5
94,763 - -0.3
94,788 + +0.5
94,788 + -1.4
94,788 + -1.0
94,788 + -0.1
94,788 + +0.2
94,789 - -0.0
94,789 - -0.0
94,789 - +0.2
94,812 + -0.4
94,813 - -0.5
94,813 - -0.5
94,813 - +0.2
94,836 + -1.0
94,836 + +0.4
94,836 + +1.2
94,870 - +0.5
94,871 + -0.5
94,871 + -1.0
94,873 + +1.1
94,873 + -1.4
95,518 - -1.0
95,530 - -1.3

Or see this region's nucleotide sequence