Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00440

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00435 and AO353_00440 are separated by 10 nucleotidesAO353_00440 and AO353_00445 are separated by 11 nucleotides AO353_00435: AO353_00435 - transcription-repair coupling factor, at 85,130 to 88,579 _00435 AO353_00440: AO353_00440 - hypothetical protein, at 88,590 to 89,156 _00440 AO353_00445: AO353_00445 - helicase, at 89,168 to 91,858 _00445 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1 2 3at 87.707 kb on + strand, within AO353_00435at 87.707 kb on + strand, within AO353_00435at 87.707 kb on + strand, within AO353_00435at 87.707 kb on + strand, within AO353_00435at 87.708 kb on - strand, within AO353_00435at 87.708 kb on - strand, within AO353_00435at 87.708 kb on - strand, within AO353_00435at 87.708 kb on - strand, within AO353_00435at 87.708 kb on - strand, within AO353_00435at 87.708 kb on - strand, within AO353_00435at 87.708 kb on - strand, within AO353_00435at 87.866 kb on + strand, within AO353_00435at 87.867 kb on - strand, within AO353_00435at 87.867 kb on - strand, within AO353_00435at 87.867 kb on - strand, within AO353_00435at 87.867 kb on - strand, within AO353_00435at 87.940 kb on + strand, within AO353_00435at 88.058 kb on + strand, within AO353_00435at 88.058 kb on + strandat 88.058 kb on + strand, within AO353_00435at 88.058 kb on + strand, within AO353_00435at 88.058 kb on + strand, within AO353_00435at 88.059 kb on - strand, within AO353_00435at 88.059 kb on - strand, within AO353_00435at 88.059 kb on - strand, within AO353_00435at 88.059 kb on - strand, within AO353_00435at 88.181 kb on + strand, within AO353_00435at 88.181 kb on + strand, within AO353_00435at 88.214 kb on + strand, within AO353_00435at 88.214 kb on + strand, within AO353_00435at 88.215 kb on - strand, within AO353_00435at 88.215 kb on - strand, within AO353_00435at 88.466 kb on + strandat 88.467 kb on - strandat 88.532 kb on - strandat 88.532 kb on - strandat 88.534 kb on + strandat 88.534 kb on + strandat 88.534 kb on + strandat 88.534 kb on + strandat 88.534 kb on + strandat 88.534 kb on + strandat 88.535 kb on - strandat 88.535 kb on - strandat 88.659 kb on + strand, within AO353_00440at 88.659 kb on + strand, within AO353_00440at 88.659 kb on + strand, within AO353_00440at 88.660 kb on - strand, within AO353_00440at 88.660 kb on - strand, within AO353_00440at 88.660 kb on - strand, within AO353_00440at 88.660 kb on - strand, within AO353_00440at 88.822 kb on - strand, within AO353_00440at 88.834 kb on + strand, within AO353_00440at 88.834 kb on + strandat 88.835 kb on - strand, within AO353_00440at 88.835 kb on - strand, within AO353_00440at 88.998 kb on + strand, within AO353_00440at 89.064 kb on + strand, within AO353_00440at 89.065 kb on - strand, within AO353_00440at 89.065 kb on - strand, within AO353_00440at 89.065 kb on - strand, within AO353_00440at 89.347 kb on + strandat 89.348 kb on - strandat 89.348 kb on - strandat 89.348 kb on - strandat 89.348 kb on - strandat 89.379 kb on + strandat 89.379 kb on + strandat 89.531 kb on - strand, within AO353_00445at 89.544 kb on + strandat 89.645 kb on + strand, within AO353_00445at 89.645 kb on + strand, within AO353_00445at 89.645 kb on + strand, within AO353_00445at 89.645 kb on + strandat 89.645 kb on + strand, within AO353_00445at 89.646 kb on - strand, within AO353_00445at 89.678 kb on + strand, within AO353_00445at 89.678 kb on + strand, within AO353_00445at 89.679 kb on - strand, within AO353_00445at 89.679 kb on - strand, within AO353_00445at 89.679 kb on - strand, within AO353_00445at 89.679 kb on - strand, within AO353_00445at 89.690 kb on + strand, within AO353_00445at 89.690 kb on + strand, within AO353_00445at 89.690 kb on + strand, within AO353_00445at 89.690 kb on + strand, within AO353_00445at 89.691 kb on - strand, within AO353_00445at 89.691 kb on - strand, within AO353_00445at 89.691 kb on - strand, within AO353_00445at 89.691 kb on - strand, within AO353_00445at 89.691 kb on - strand, within AO353_00445at 89.691 kb on - strand, within AO353_00445at 89.861 kb on + strand, within AO353_00445at 89.861 kb on + strand, within AO353_00445at 89.862 kb on - strand, within AO353_00445at 89.862 kb on - strand, within AO353_00445at 89.862 kb on - strand, within AO353_00445at 89.862 kb on - strand, within AO353_00445at 89.862 kb on - strand, within AO353_00445at 89.920 kb on - strand, within AO353_00445at 89.990 kb on + strand, within AO353_00445at 90.046 kb on + strand, within AO353_00445at 90.046 kb on + strand, within AO353_00445

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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87,707 + AO353_00435 0.75 -0.7
87,707 + AO353_00435 0.75 -0.5
87,707 + AO353_00435 0.75 +1.5
87,707 + AO353_00435 0.75 +0.2
87,708 - AO353_00435 0.75 +1.0
87,708 - AO353_00435 0.75 +0.1
87,708 - AO353_00435 0.75 -0.2
87,708 - AO353_00435 0.75 -0.2
87,708 - AO353_00435 0.75 -0.1
87,708 - AO353_00435 0.75 -0.7
87,708 - AO353_00435 0.75 +0.6
87,866 + AO353_00435 0.79 +0.3
87,867 - AO353_00435 0.79 -0.5
87,867 - AO353_00435 0.79 +2.8
87,867 - AO353_00435 0.79 +0.5
87,867 - AO353_00435 0.79 +0.5
87,940 + AO353_00435 0.81 -1.4
88,058 + AO353_00435 0.85 +0.4
88,058 + -0.5
88,058 + AO353_00435 0.85 +0.9
88,058 + AO353_00435 0.85 +0.5
88,058 + AO353_00435 0.85 -1.8
88,059 - AO353_00435 0.85 -0.3
88,059 - AO353_00435 0.85 +0.1
88,059 - AO353_00435 0.85 -0.7
88,059 - AO353_00435 0.85 +1.1
88,181 + AO353_00435 0.88 -0.5
88,181 + AO353_00435 0.88 -1.1
88,214 + AO353_00435 0.89 -0.8
88,214 + AO353_00435 0.89 -1.9
88,215 - AO353_00435 0.89 +1.8
88,215 - AO353_00435 0.89 -1.8
88,466 + +0.8
88,467 - +0.2
88,532 - +0.5
88,532 - +0.0
88,534 + +2.8
88,534 + +0.8
88,534 + -0.5
88,534 + +1.1
88,534 + -0.2
88,534 + +0.8
88,535 - +0.3
88,535 - -0.2
88,659 + AO353_00440 0.12 -0.2
88,659 + AO353_00440 0.12 +0.3
88,659 + AO353_00440 0.12 +1.5
88,660 - AO353_00440 0.12 +0.2
88,660 - AO353_00440 0.12 +0.5
88,660 - AO353_00440 0.12 +2.1
88,660 - AO353_00440 0.12 +0.6
88,822 - AO353_00440 0.41 +0.2
88,834 + AO353_00440 0.43 +0.1
88,834 + +0.8
88,835 - AO353_00440 0.43 -0.3
88,835 - AO353_00440 0.43 -0.1
88,998 + AO353_00440 0.72 -0.2
89,064 + AO353_00440 0.84 -1.1
89,065 - AO353_00440 0.84 +0.6
89,065 - AO353_00440 0.84 -0.8
89,065 - AO353_00440 0.84 -0.5
89,347 + +0.6
89,348 - +0.8
89,348 - +0.8
89,348 - +1.1
89,348 - +0.8
89,379 + -0.0
89,379 + -0.3
89,531 - AO353_00445 0.13 +0.4
89,544 + +1.8
89,645 + AO353_00445 0.18 -0.9
89,645 + AO353_00445 0.18 -1.7
89,645 + AO353_00445 0.18 +0.1
89,645 + +0.8
89,645 + AO353_00445 0.18 -0.2
89,646 - AO353_00445 0.18 +0.8
89,678 + AO353_00445 0.19 -0.8
89,678 + AO353_00445 0.19 -0.1
89,679 - AO353_00445 0.19 +0.2
89,679 - AO353_00445 0.19 -0.3
89,679 - AO353_00445 0.19 +0.2
89,679 - AO353_00445 0.19 +0.2
89,690 + AO353_00445 0.19 -0.3
89,690 + AO353_00445 0.19 -0.0
89,690 + AO353_00445 0.19 +0.8
89,690 + AO353_00445 0.19 -1.4
89,691 - AO353_00445 0.19 +2.5
89,691 - AO353_00445 0.19 +0.2
89,691 - AO353_00445 0.19 +0.2
89,691 - AO353_00445 0.19 +0.5
89,691 - AO353_00445 0.19 +0.1
89,691 - AO353_00445 0.19 -1.5
89,861 + AO353_00445 0.26 -1.1
89,861 + AO353_00445 0.26 +0.8
89,862 - AO353_00445 0.26 -0.2
89,862 - AO353_00445 0.26 -1.5
89,862 - AO353_00445 0.26 +0.8
89,862 - AO353_00445 0.26 -0.3
89,862 - AO353_00445 0.26 -1.1
89,920 - AO353_00445 0.28 +0.8
89,990 + AO353_00445 0.31 +0.2
90,046 + AO353_00445 0.33 +0.8
90,046 + AO353_00445 0.33 -0.5

Or see this region's nucleotide sequence