Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00225 and AO353_00230 overlap by 89 nucleotides AO353_00230 and AO353_00235 are separated by 65 nucleotides AO353_00235 and AO353_00240 are separated by 42 nucleotides AO353_00240 and AO353_00245 are separated by 141 nucleotides AO353_00245 and AO353_00250 are separated by 92 nucleotides
AO353_00225: AO353_00225 - terminase, at 41,662 to 43,713
_00225
AO353_00230: AO353_00230 - terminase, at 43,625 to 44,503
_00230
AO353_00235: AO353_00235 - transcriptional regulator, at 44,569 to 44,826
_00235
AO353_00240: AO353_00240 - hypothetical protein, at 44,869 to 45,048
_00240
AO353_00245: AO353_00245 - XRE family transcriptional regulator, at 45,190 to 45,537
_00245
AO353_00250: AO353_00250 - hypothetical protein, at 45,630 to 45,830
_00250
Position (kb)
44
45 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 43.577 kb on + strand at 43.577 kb on + strand at 43.577 kb on + strand at 43.577 kb on + strand at 43.577 kb on + strand at 43.578 kb on - strand at 43.613 kb on + strand at 43.613 kb on + strand at 43.613 kb on + strand at 43.613 kb on + strand at 43.614 kb on - strand at 43.614 kb on - strand at 43.614 kb on - strand at 43.614 kb on - strand at 43.769 kb on + strand, within AO353_00230 at 43.769 kb on + strand, within AO353_00230 at 43.769 kb on + strand, within AO353_00230 at 43.769 kb on + strand, within AO353_00230 at 43.769 kb on + strand, within AO353_00230 at 43.769 kb on + strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.770 kb on - strand, within AO353_00230 at 43.949 kb on + strand, within AO353_00230 at 43.949 kb on + strand, within AO353_00230 at 43.950 kb on - strand, within AO353_00230 at 43.970 kb on + strand, within AO353_00230 at 43.971 kb on - strand, within AO353_00230 at 43.971 kb on - strand, within AO353_00230 at 43.971 kb on - strand, within AO353_00230 at 43.985 kb on + strand, within AO353_00230 at 43.985 kb on + strand, within AO353_00230 at 43.985 kb on + strand, within AO353_00230 at 43.986 kb on - strand, within AO353_00230 at 44.045 kb on + strand, within AO353_00230 at 44.045 kb on + strand, within AO353_00230 at 44.048 kb on + strand, within AO353_00230 at 44.049 kb on - strand, within AO353_00230 at 44.049 kb on - strand, within AO353_00230 at 44.049 kb on - strand, within AO353_00230 at 44.049 kb on - strand, within AO353_00230 at 44.049 kb on - strand, within AO353_00230 at 44.072 kb on + strand, within AO353_00230 at 44.072 kb on + strand, within AO353_00230 at 44.072 kb on + strand, within AO353_00230 at 44.073 kb on - strand, within AO353_00230 at 44.073 kb on - strand, within AO353_00230 at 44.082 kb on - strand, within AO353_00230 at 44.082 kb on - strand, within AO353_00230 at 44.082 kb on - strand, within AO353_00230 at 44.375 kb on + strand, within AO353_00230 at 44.375 kb on + strand, within AO353_00230 at 44.375 kb on + strand, within AO353_00230 at 44.375 kb on + strand, within AO353_00230 at 44.376 kb on - strand, within AO353_00230 at 44.376 kb on - strand, within AO353_00230 at 44.376 kb on - strand, within AO353_00230 at 44.413 kb on + strand, within AO353_00230 at 44.414 kb on - strand, within AO353_00230 at 44.434 kb on - strand at 44.624 kb on + strand, within AO353_00235 at 44.625 kb on - strand, within AO353_00235 at 44.625 kb on - strand, within AO353_00235 at 44.647 kb on + strand, within AO353_00235 at 44.647 kb on + strand, within AO353_00235 at 44.647 kb on + strand, within AO353_00235 at 44.647 kb on + strand, within AO353_00235 at 44.648 kb on - strand, within AO353_00235 at 44.648 kb on - strand, within AO353_00235 at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.092 kb on - strand at 45.095 kb on - strand at 45.095 kb on - strand at 45.095 kb on - strand at 45.095 kb on - strand at 45.095 kb on - strand at 45.095 kb on - strand at 45.095 kb on - strand at 45.148 kb on - strand at 45.148 kb on - strand at 45.148 kb on - strand at 45.148 kb on - strand at 45.148 kb on - strand at 45.148 kb on - strand at 45.148 kb on - strand at 45.192 kb on - strand at 45.604 kb on - strand at 45.604 kb on - strand at 45.604 kb on - strand at 45.630 kb on - strand at 45.630 kb on - strand at 45.684 kb on - strand, within AO353_00250 at 45.684 kb on - strand, within AO353_00250 at 45.684 kb on - strand, within AO353_00250 at 45.684 kb on - strand, within AO353_00250 at 45.684 kb on - strand, within AO353_00250 at 45.684 kb on - strand, within AO353_00250 at 45.684 kb on - strand, within AO353_00250 at 45.684 kb on - strand, within AO353_00250 at 45.684 kb on - strand, within AO353_00250
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 43,577 + -0.2 43,577 + -1.3 43,577 + -0.8 43,577 + -0.7 43,577 + +0.6 43,578 - -0.1 43,613 + -0.4 43,613 + -1.4 43,613 + -0.2 43,613 + -0.2 43,614 - +0.6 43,614 - -0.1 43,614 - -0.4 43,614 - -1.2 43,769 + AO353_00230 0.16 +0.2 43,769 + AO353_00230 0.16 -0.0 43,769 + AO353_00230 0.16 +1.8 43,769 + AO353_00230 0.16 +0.3 43,769 + AO353_00230 0.16 -0.8 43,769 + AO353_00230 0.16 -0.7 43,770 - AO353_00230 0.16 +1.8 43,770 - AO353_00230 0.16 -1.5 43,770 - AO353_00230 0.16 -0.6 43,770 - AO353_00230 0.16 +1.8 43,770 - AO353_00230 0.16 -0.6 43,770 - AO353_00230 0.16 -1.4 43,770 - AO353_00230 0.16 -0.0 43,770 - AO353_00230 0.16 +0.2 43,770 - AO353_00230 0.16 -0.9 43,770 - AO353_00230 0.16 +0.2 43,770 - AO353_00230 0.16 +0.1 43,770 - AO353_00230 0.16 +0.4 43,770 - AO353_00230 0.16 -0.2 43,770 - AO353_00230 0.16 +0.2 43,949 + AO353_00230 0.37 -1.2 43,949 + AO353_00230 0.37 +0.5 43,950 - AO353_00230 0.37 +0.2 43,970 + AO353_00230 0.39 -0.2 43,971 - AO353_00230 0.39 -0.5 43,971 - AO353_00230 0.39 -1.5 43,971 - AO353_00230 0.39 +1.8 43,985 + AO353_00230 0.41 -0.9 43,985 + AO353_00230 0.41 +0.1 43,985 + AO353_00230 0.41 -0.1 43,986 - AO353_00230 0.41 -0.9 44,045 + AO353_00230 0.48 -1.0 44,045 + AO353_00230 0.48 +1.8 44,048 + AO353_00230 0.48 +0.2 44,049 - AO353_00230 0.48 +1.0 44,049 - AO353_00230 0.48 -1.4 44,049 - AO353_00230 0.48 +0.2 44,049 - AO353_00230 0.48 -0.6 44,049 - AO353_00230 0.48 -1.1 44,072 + AO353_00230 0.51 +0.2 44,072 + AO353_00230 0.51 -0.4 44,072 + AO353_00230 0.51 +0.2 44,073 - AO353_00230 0.51 +1.4 44,073 - AO353_00230 0.51 -0.5 44,082 - AO353_00230 0.52 +0.8 44,082 - AO353_00230 0.52 -1.0 44,082 - AO353_00230 0.52 +0.2 44,375 + AO353_00230 0.85 -0.5 44,375 + AO353_00230 0.85 -0.6 44,375 + AO353_00230 0.85 +1.4 44,375 + AO353_00230 0.85 -0.5 44,376 - AO353_00230 0.85 -0.6 44,376 - AO353_00230 0.85 -1.4 44,376 - AO353_00230 0.85 -1.0 44,413 + AO353_00230 0.90 +0.1 44,414 - AO353_00230 0.90 -1.5 44,434 - -0.6 44,624 + AO353_00235 0.21 +0.8 44,625 - AO353_00235 0.22 +1.1 44,625 - AO353_00235 0.22 -2.2 44,647 + AO353_00235 0.30 +0.2 44,647 + AO353_00235 0.30 +0.8 44,647 + AO353_00235 0.30 +0.8 44,647 + AO353_00235 0.30 +0.2 44,648 - AO353_00235 0.31 +0.8 44,648 - AO353_00235 0.31 -0.8 45,092 - -0.9 45,092 - -0.4 45,092 - -0.5 45,092 - +0.6 45,092 - +0.1 45,092 - +0.6 45,092 - -1.3 45,092 - -0.5 45,092 - +1.4 45,092 - -0.2 45,092 - -0.1 45,092 - -0.1 45,095 - +0.2 45,095 - +2.0 45,095 - +1.4 45,095 - -1.3 45,095 - -1.1 45,095 - +0.2 45,095 - +0.8 45,148 - +1.1 45,148 - -0.7 45,148 - +0.3 45,148 - -1.1 45,148 - +0.2 45,148 - +0.6 45,148 - +0.0 45,192 - -1.9 45,604 - +0.4 45,604 - -0.6 45,604 - +1.2 45,630 - +1.8 45,630 - +1.3 45,684 - AO353_00250 0.27 +0.3 45,684 - AO353_00250 0.27 +0.8 45,684 - AO353_00250 0.27 -2.1 45,684 - AO353_00250 0.27 -0.7 45,684 - AO353_00250 0.27 +0.2 45,684 - AO353_00250 0.27 -0.9 45,684 - AO353_00250 0.27 +0.4 45,684 - AO353_00250 0.27 -0.7 45,684 - AO353_00250 0.27 -1.0
Or see this region's nucleotide sequence