Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3138 and DvMF_3139 are separated by 6 nucleotides DvMF_3139 and DvMF_3140 are separated by 335 nucleotides DvMF_3140 and DvMF_3141 are separated by 473 nucleotides
DvMF_3138: DvMF_3138 - cobalt ABC transporter, inner membrane subunit CbiQ (RefSeq), at 3,957,986 to 3,958,783
_3138
DvMF_3139: DvMF_3139 - cobalt transport protein CbiM (RefSeq), at 3,958,790 to 3,959,404
_3139
DvMF_3140: DvMF_3140 - Citrate transporter (RefSeq), at 3,959,740 to 3,961,173
_3140
DvMF_3141: DvMF_3141 - tRNA guanosine-2'-O-methyltransferase (RefSeq), at 3,961,647 to 3,962,210
_3141
Position (kb)
3959
3960
3961
3962 Strain fitness (log2 ratio)
-1
0
1 at 3958.832 kb on + strand at 3959.000 kb on + strand, within DvMF_3139 at 3959.083 kb on - strand, within DvMF_3139 at 3959.124 kb on + strand, within DvMF_3139 at 3959.399 kb on + strand at 3959.474 kb on + strand at 3959.629 kb on + strand at 3959.652 kb on + strand at 3959.750 kb on - strand at 3961.566 kb on - strand at 3961.693 kb on + strand at 3961.779 kb on - strand, within DvMF_3141 at 3961.789 kb on - strand, within DvMF_3141 at 3962.067 kb on + strand, within DvMF_3141
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 3,958,832 + -0.9 3,959,000 + DvMF_3139 0.34 -1.2 3,959,083 - DvMF_3139 0.48 -1.2 3,959,124 + DvMF_3139 0.54 -1.3 3,959,399 + -0.8 3,959,474 + -0.8 3,959,629 + -0.2 3,959,652 + -0.7 3,959,750 - -0.3 3,961,566 - -0.3 3,961,693 + -0.5 3,961,779 - DvMF_3141 0.23 +0.2 3,961,789 - DvMF_3141 0.25 -0.3 3,962,067 + DvMF_3141 0.74 -0.0
Or see this region's nucleotide sequence