Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3078

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3077 and mazG are separated by 115 nucleotidesmazG and DvMF_3079 overlap by 1 nucleotides DvMF_3077: DvMF_3077 - Colicin V production protein (RefSeq), at 3,886,409 to 3,886,885 _3077 DvMF_3078: mazG - nucleoside triphosphate pyrophosphohydrolase (RefSeq), at 3,887,001 to 3,887,864 mazG DvMF_3079: DvMF_3079 - hypothetical protein (RefSeq), at 3,887,864 to 3,889,366 _3079 Position (kb) 3887 3888Strain fitness (log2 ratio) -1 0 1at 3886.008 kb on - strandat 3886.008 kb on - strandat 3886.037 kb on + strandat 3886.576 kb on + strand, within DvMF_3077at 3888.158 kb on - strand, within DvMF_3079at 3888.287 kb on - strand, within DvMF_3079

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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3,886,008 - -0.7
3,886,008 - -0.8
3,886,037 + -0.4
3,886,576 + DvMF_3077 0.35 -0.3
3,888,158 - DvMF_3079 0.20 -0.5
3,888,287 - DvMF_3079 0.28 -0.5

Or see this region's nucleotide sequence