Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2924

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2922 and DvMF_2923 are separated by 176 nucleotidesDvMF_2923 and rpsB are separated by 34 nucleotidesrpsB and DvMF_2925 are separated by 327 nucleotides DvMF_2922: DvMF_2922 - NAD-dependent epimerase/dehydratase (RefSeq), at 3,692,137 to 3,693,156 _2922 DvMF_2923: DvMF_2923 - translation elongation factor Ts (RefSeq), at 3,693,333 to 3,693,935 _2923 DvMF_2924: rpsB - 30S ribosomal protein S2 (RefSeq), at 3,693,970 to 3,694,785 rpsB DvMF_2925: DvMF_2925 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase (RefSeq), at 3,695,113 to 3,695,895 _2925 Position (kb) 3693 3694 3695Strain fitness (log2 ratio) -1 0 1at 3693.336 kb on + strandat 3695.042 kb on - strandat 3695.153 kb on - strandat 3695.153 kb on - strandat 3695.178 kb on + strandat 3695.360 kb on - strand, within DvMF_2925at 3695.365 kb on - strand, within DvMF_2925at 3695.434 kb on - strand, within DvMF_2925at 3695.509 kb on + strand, within DvMF_2925at 3695.697 kb on + strand, within DvMF_2925

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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3,693,336 + +0.0
3,695,042 - -0.4
3,695,153 - +0.2
3,695,153 - -0.1
3,695,178 + +0.5
3,695,360 - DvMF_2925 0.32 -0.2
3,695,365 - DvMF_2925 0.32 -0.2
3,695,434 - DvMF_2925 0.41 +0.1
3,695,509 + DvMF_2925 0.51 +0.8
3,695,697 + DvMF_2925 0.75 -0.3

Or see this region's nucleotide sequence