Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2798 and DvMF_2799 are separated by 315 nucleotides DvMF_2799 and DvMF_2800 are separated by 155 nucleotides DvMF_2800 and DvMF_2801 overlap by 4 nucleotides
DvMF_2798: DvMF_2798 - transcription activator effector binding (RefSeq), at 3,542,109 to 3,542,579
_2798
DvMF_2799: DvMF_2799 - histone family protein DNA-binding protein (RefSeq), at 3,542,895 to 3,543,170
_2799
DvMF_2800: DvMF_2800 - hypothetical protein (RefSeq), at 3,543,326 to 3,543,733
_2800
DvMF_2801: DvMF_2801 - Hydroxypyruvate reductase (RefSeq), at 3,543,730 to 3,545,088
_2801
Position (kb)
3543
3544 Strain fitness (log2 ratio)
-1
0
1 at 3542.600 kb on - strand at 3542.788 kb on + strand at 3542.830 kb on - strand at 3543.043 kb on + strand, within DvMF_2799 at 3543.361 kb on - strand at 3543.383 kb on + strand, within DvMF_2800 at 3543.435 kb on + strand, within DvMF_2800 at 3543.440 kb on + strand, within DvMF_2800 at 3543.677 kb on - strand, within DvMF_2800 at 3543.677 kb on - strand, within DvMF_2800 at 3543.798 kb on - strand at 3543.803 kb on - strand at 3543.927 kb on - strand, within DvMF_2801 at 3544.290 kb on - strand, within DvMF_2801 at 3544.344 kb on + strand, within DvMF_2801 at 3544.436 kb on - strand, within DvMF_2801 at 3544.558 kb on + strand, within DvMF_2801 at 3544.670 kb on - strand, within DvMF_2801
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 3,542,600 - -0.8 3,542,788 + -0.4 3,542,830 - -0.7 3,543,043 + DvMF_2799 0.54 -1.2 3,543,361 - -0.2 3,543,383 + DvMF_2800 0.14 -1.3 3,543,435 + DvMF_2800 0.27 -0.7 3,543,440 + DvMF_2800 0.28 -0.5 3,543,677 - DvMF_2800 0.86 -0.5 3,543,677 - DvMF_2800 0.86 -0.3 3,543,798 - +0.1 3,543,803 - -0.3 3,543,927 - DvMF_2801 0.14 -0.6 3,544,290 - DvMF_2801 0.41 -0.2 3,544,344 + DvMF_2801 0.45 -0.6 3,544,436 - DvMF_2801 0.52 -0.4 3,544,558 + DvMF_2801 0.61 +0.8 3,544,670 - DvMF_2801 0.69 -0.3
Or see this region's nucleotide sequence