Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2684 and DvMF_2685 are separated by 104 nucleotides DvMF_2685 and DvMF_2686 are separated by 88 nucleotides
DvMF_2684: DvMF_2684 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,395,988 to 3,397,061
_2684
DvMF_2685: DvMF_2685 - extracellular solute-binding protein family 3 (RefSeq), at 3,397,166 to 3,398,032
_2685
DvMF_2686: DvMF_2686 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,398,121 to 3,399,071
_2686
Position (kb)
3397
3398
3399 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3396.266 kb on + strand, within DvMF_2684 at 3396.346 kb on + strand, within DvMF_2684 at 3396.356 kb on + strand, within DvMF_2684 at 3396.453 kb on + strand, within DvMF_2684 at 3396.456 kb on - strand, within DvMF_2684 at 3396.744 kb on + strand, within DvMF_2684 at 3396.861 kb on - strand, within DvMF_2684 at 3396.861 kb on - strand, within DvMF_2684 at 3396.948 kb on + strand, within DvMF_2684 at 3397.048 kb on + strand at 3397.459 kb on + strand, within DvMF_2685 at 3397.571 kb on - strand, within DvMF_2685 at 3397.697 kb on + strand, within DvMF_2685 at 3397.710 kb on - strand, within DvMF_2685 at 3398.254 kb on - strand, within DvMF_2686 at 3398.284 kb on + strand, within DvMF_2686 at 3398.399 kb on + strand, within DvMF_2686 at 3398.407 kb on - strand, within DvMF_2686 at 3398.407 kb on - strand, within DvMF_2686 at 3398.429 kb on - strand, within DvMF_2686 at 3398.496 kb on + strand, within DvMF_2686 at 3398.689 kb on - strand, within DvMF_2686 at 3398.802 kb on + strand, within DvMF_2686 at 3398.831 kb on + strand, within DvMF_2686 at 3398.839 kb on - strand, within DvMF_2686
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 3,396,266 + DvMF_2684 0.26 -0.5 3,396,346 + DvMF_2684 0.33 +0.1 3,396,356 + DvMF_2684 0.34 -0.3 3,396,453 + DvMF_2684 0.43 -0.4 3,396,456 - DvMF_2684 0.44 -0.3 3,396,744 + DvMF_2684 0.70 -0.8 3,396,861 - DvMF_2684 0.81 -0.3 3,396,861 - DvMF_2684 0.81 -0.3 3,396,948 + DvMF_2684 0.89 -0.5 3,397,048 + -0.5 3,397,459 + DvMF_2685 0.34 -3.5 3,397,571 - DvMF_2685 0.47 -0.1 3,397,697 + DvMF_2685 0.61 -0.1 3,397,710 - DvMF_2685 0.63 -0.2 3,398,254 - DvMF_2686 0.14 -0.5 3,398,284 + DvMF_2686 0.17 -0.8 3,398,399 + DvMF_2686 0.29 +0.2 3,398,407 - DvMF_2686 0.30 -0.2 3,398,407 - DvMF_2686 0.30 -0.2 3,398,429 - DvMF_2686 0.32 -0.5 3,398,496 + DvMF_2686 0.39 -0.5 3,398,689 - DvMF_2686 0.60 -0.6 3,398,802 + DvMF_2686 0.72 -0.9 3,398,831 + DvMF_2686 0.75 -0.9 3,398,839 - DvMF_2686 0.75 -0.2
Or see this region's nucleotide sequence