Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2569 and DvMF_2570 are separated by 8 nucleotides DvMF_2570 and DvMF_2571 are separated by 2 nucleotides DvMF_2571 and DvMF_2572 are separated by 351 nucleotides
DvMF_2569: DvMF_2569 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 3,247,690 to 3,248,673
_2569
DvMF_2570: DvMF_2570 - hypothetical protein (RefSeq), at 3,248,682 to 3,250,268
_2570
DvMF_2571: DvMF_2571 - hypothetical protein (RefSeq), at 3,250,271 to 3,250,729
_2571
DvMF_2572: DvMF_2572 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,251,081 to 3,252,637
_2572
Position (kb)
3248
3249
3250
3251 Strain fitness (log2 ratio)
-1
0
1 at 3247.708 kb on + strand at 3247.840 kb on + strand, within DvMF_2569 at 3247.959 kb on + strand, within DvMF_2569 at 3248.023 kb on + strand, within DvMF_2569 at 3248.158 kb on - strand, within DvMF_2569 at 3248.170 kb on - strand, within DvMF_2569 at 3248.240 kb on + strand, within DvMF_2569 at 3248.649 kb on + strand at 3248.952 kb on - strand, within DvMF_2570 at 3248.952 kb on - strand, within DvMF_2570 at 3249.110 kb on + strand, within DvMF_2570 at 3249.118 kb on - strand, within DvMF_2570 at 3249.287 kb on - strand, within DvMF_2570 at 3249.292 kb on - strand, within DvMF_2570 at 3249.972 kb on + strand, within DvMF_2570 at 3250.042 kb on - strand, within DvMF_2570 at 3250.242 kb on + strand at 3250.250 kb on - strand at 3250.309 kb on + strand at 3250.317 kb on - strand, within DvMF_2571 at 3250.317 kb on - strand, within DvMF_2571 at 3250.324 kb on + strand, within DvMF_2571 at 3250.324 kb on + strand, within DvMF_2571 at 3250.324 kb on + strand, within DvMF_2571 at 3250.332 kb on - strand, within DvMF_2571 at 3250.338 kb on + strand, within DvMF_2571 at 3250.525 kb on + strand, within DvMF_2571 at 3250.612 kb on - strand, within DvMF_2571 at 3250.760 kb on + strand at 3251.056 kb on + strand at 3251.116 kb on + strand at 3251.212 kb on + strand at 3251.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 3,247,708 + -0.1 3,247,840 + DvMF_2569 0.15 -0.3 3,247,959 + DvMF_2569 0.27 -0.9 3,248,023 + DvMF_2569 0.34 -0.2 3,248,158 - DvMF_2569 0.48 -1.2 3,248,170 - DvMF_2569 0.49 -0.9 3,248,240 + DvMF_2569 0.56 -0.3 3,248,649 + -0.5 3,248,952 - DvMF_2570 0.17 -0.7 3,248,952 - DvMF_2570 0.17 -0.8 3,249,110 + DvMF_2570 0.27 -0.2 3,249,118 - DvMF_2570 0.27 -1.0 3,249,287 - DvMF_2570 0.38 -0.7 3,249,292 - DvMF_2570 0.38 -0.8 3,249,972 + DvMF_2570 0.81 -1.4 3,250,042 - DvMF_2570 0.86 -0.5 3,250,242 + -0.6 3,250,250 - +0.0 3,250,309 + +0.2 3,250,317 - DvMF_2571 0.10 -0.0 3,250,317 - DvMF_2571 0.10 -0.5 3,250,324 + DvMF_2571 0.12 -0.0 3,250,324 + DvMF_2571 0.12 -0.5 3,250,324 + DvMF_2571 0.12 -0.3 3,250,332 - DvMF_2571 0.13 +0.0 3,250,338 + DvMF_2571 0.15 -0.4 3,250,525 + DvMF_2571 0.55 -0.2 3,250,612 - DvMF_2571 0.74 -0.5 3,250,760 + -0.4 3,251,056 + -0.3 3,251,116 + -0.3 3,251,212 + -0.2 3,251,224 - -0.7
Or see this region's nucleotide sequence