Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2570

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2569 and DvMF_2570 are separated by 8 nucleotidesDvMF_2570 and DvMF_2571 are separated by 2 nucleotidesDvMF_2571 and DvMF_2572 are separated by 351 nucleotides DvMF_2569: DvMF_2569 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 3,247,690 to 3,248,673 _2569 DvMF_2570: DvMF_2570 - hypothetical protein (RefSeq), at 3,248,682 to 3,250,268 _2570 DvMF_2571: DvMF_2571 - hypothetical protein (RefSeq), at 3,250,271 to 3,250,729 _2571 DvMF_2572: DvMF_2572 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,251,081 to 3,252,637 _2572 Position (kb) 3248 3249 3250 3251Strain fitness (log2 ratio) -1 0 1at 3247.708 kb on + strandat 3247.840 kb on + strand, within DvMF_2569at 3247.959 kb on + strand, within DvMF_2569at 3248.023 kb on + strand, within DvMF_2569at 3248.158 kb on - strand, within DvMF_2569at 3248.170 kb on - strand, within DvMF_2569at 3248.240 kb on + strand, within DvMF_2569at 3248.649 kb on + strandat 3248.952 kb on - strand, within DvMF_2570at 3248.952 kb on - strand, within DvMF_2570at 3249.110 kb on + strand, within DvMF_2570at 3249.118 kb on - strand, within DvMF_2570at 3249.287 kb on - strand, within DvMF_2570at 3249.292 kb on - strand, within DvMF_2570at 3249.972 kb on + strand, within DvMF_2570at 3250.042 kb on - strand, within DvMF_2570at 3250.242 kb on + strandat 3250.250 kb on - strandat 3250.309 kb on + strandat 3250.317 kb on - strand, within DvMF_2571at 3250.317 kb on - strand, within DvMF_2571at 3250.324 kb on + strand, within DvMF_2571at 3250.324 kb on + strand, within DvMF_2571at 3250.324 kb on + strand, within DvMF_2571at 3250.332 kb on - strand, within DvMF_2571at 3250.338 kb on + strand, within DvMF_2571at 3250.525 kb on + strand, within DvMF_2571at 3250.612 kb on - strand, within DvMF_2571at 3250.760 kb on + strandat 3251.056 kb on + strandat 3251.116 kb on + strandat 3251.212 kb on + strandat 3251.224 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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3,247,708 + -0.1
3,247,840 + DvMF_2569 0.15 -0.3
3,247,959 + DvMF_2569 0.27 -0.9
3,248,023 + DvMF_2569 0.34 -0.2
3,248,158 - DvMF_2569 0.48 -1.2
3,248,170 - DvMF_2569 0.49 -0.9
3,248,240 + DvMF_2569 0.56 -0.3
3,248,649 + -0.5
3,248,952 - DvMF_2570 0.17 -0.7
3,248,952 - DvMF_2570 0.17 -0.8
3,249,110 + DvMF_2570 0.27 -0.2
3,249,118 - DvMF_2570 0.27 -1.0
3,249,287 - DvMF_2570 0.38 -0.7
3,249,292 - DvMF_2570 0.38 -0.8
3,249,972 + DvMF_2570 0.81 -1.4
3,250,042 - DvMF_2570 0.86 -0.5
3,250,242 + -0.6
3,250,250 - +0.0
3,250,309 + +0.2
3,250,317 - DvMF_2571 0.10 -0.0
3,250,317 - DvMF_2571 0.10 -0.5
3,250,324 + DvMF_2571 0.12 -0.0
3,250,324 + DvMF_2571 0.12 -0.5
3,250,324 + DvMF_2571 0.12 -0.3
3,250,332 - DvMF_2571 0.13 +0.0
3,250,338 + DvMF_2571 0.15 -0.4
3,250,525 + DvMF_2571 0.55 -0.2
3,250,612 - DvMF_2571 0.74 -0.5
3,250,760 + -0.4
3,251,056 + -0.3
3,251,116 + -0.3
3,251,212 + -0.2
3,251,224 - -0.7

Or see this region's nucleotide sequence