Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2533 and DvMF_2534 are separated by 7 nucleotides DvMF_2534 and DvMF_2535 are separated by 113 nucleotides DvMF_2535 and DvMF_2536 are separated by 27 nucleotides
DvMF_2533: DvMF_2533 - formate dehydrogenase, alpha subunit (RefSeq), at 3,196,674 to 3,199,706
_2533
DvMF_2534: DvMF_2534 - formate dehydrogenase beta subunit (RefSeq), at 3,199,714 to 3,200,466
_2534
DvMF_2535: DvMF_2535 - Methyltransferase type 11 (RefSeq), at 3,200,580 to 3,201,257
_2535
DvMF_2536: DvMF_2536 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,201,285 to 3,202,718
_2536
Position (kb)
3200
3201
3202 Strain fitness (log2 ratio)
-2
-1
0
1 at 3199.701 kb on + strand at 3199.755 kb on - strand at 3199.878 kb on + strand, within DvMF_2534 at 3199.900 kb on + strand, within DvMF_2534 at 3199.952 kb on + strand, within DvMF_2534 at 3199.960 kb on - strand, within DvMF_2534 at 3200.340 kb on - strand, within DvMF_2534 at 3200.461 kb on + strand at 3200.461 kb on + strand at 3200.461 kb on + strand at 3200.469 kb on - strand at 3200.469 kb on - strand at 3200.498 kb on - strand at 3200.577 kb on + strand at 3200.818 kb on + strand, within DvMF_2535 at 3200.818 kb on + strand, within DvMF_2535 at 3200.826 kb on - strand, within DvMF_2535 at 3201.142 kb on - strand, within DvMF_2535 at 3201.215 kb on + strand at 3201.223 kb on - strand at 3201.339 kb on + strand at 3201.722 kb on - strand, within DvMF_2536 at 3202.132 kb on - strand, within DvMF_2536 at 3202.134 kb on + strand, within DvMF_2536 at 3202.142 kb on - strand, within DvMF_2536 at 3202.142 kb on - strand, within DvMF_2536
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 3,199,701 + -0.5 3,199,755 - -0.2 3,199,878 + DvMF_2534 0.22 -0.4 3,199,900 + DvMF_2534 0.25 -0.3 3,199,952 + DvMF_2534 0.32 -0.3 3,199,960 - DvMF_2534 0.33 -0.0 3,200,340 - DvMF_2534 0.83 -2.6 3,200,461 + -0.3 3,200,461 + -0.2 3,200,461 + +0.5 3,200,469 - -0.8 3,200,469 - -0.3 3,200,498 - -0.9 3,200,577 + -0.6 3,200,818 + DvMF_2535 0.35 -1.2 3,200,818 + DvMF_2535 0.35 -0.3 3,200,826 - DvMF_2535 0.36 -0.3 3,201,142 - DvMF_2535 0.83 -1.7 3,201,215 + +1.2 3,201,223 - -0.2 3,201,339 + +0.6 3,201,722 - DvMF_2536 0.30 +0.2 3,202,132 - DvMF_2536 0.59 +0.4 3,202,134 + DvMF_2536 0.59 +0.3 3,202,142 - DvMF_2536 0.60 +0.3 3,202,142 - DvMF_2536 0.60 +0.2
Or see this region's nucleotide sequence