Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2517

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2516 and DvMF_2517 are separated by 443 nucleotidesDvMF_2517 and flgG are separated by 298 nucleotides DvMF_2516: DvMF_2516 - protein of unknown function DUF150 (RefSeq), at 3,172,755 to 3,173,435 _2516 DvMF_2517: DvMF_2517 - protein of unknown function DUF1078 domain protein (RefSeq), at 3,173,879 to 3,174,658 _2517 DvMF_2518: flgG - flagellar basal body rod protein FlgG (RefSeq), at 3,174,957 to 3,175,739 flgG Position (kb) 3173 3174 3175Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3172.927 kb on + strand, within DvMF_2516at 3173.170 kb on - strand, within DvMF_2516at 3173.198 kb on + strand, within DvMF_2516at 3173.390 kb on - strandat 3173.390 kb on - strandat 3173.717 kb on + strandat 3174.290 kb on + strand, within DvMF_2517at 3174.314 kb on + strand, within DvMF_2517at 3174.322 kb on - strand, within DvMF_2517at 3174.508 kb on + strand, within DvMF_2517at 3174.511 kb on - strand, within DvMF_2517at 3174.521 kb on - strand, within DvMF_2517at 3174.844 kb on + strandat 3175.194 kb on + strand, within flgGat 3175.290 kb on + strand, within flgGat 3175.436 kb on - strand, within flgGat 3175.554 kb on + strand, within flgGat 3175.601 kb on - strand, within flgG

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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3,172,927 + DvMF_2516 0.25 -0.5
3,173,170 - DvMF_2516 0.61 -0.7
3,173,198 + DvMF_2516 0.65 -1.7
3,173,390 - -0.8
3,173,390 - -1.2
3,173,717 + -0.7
3,174,290 + DvMF_2517 0.53 -3.3
3,174,314 + DvMF_2517 0.56 -3.8
3,174,322 - DvMF_2517 0.57 -3.7
3,174,508 + DvMF_2517 0.81 -3.7
3,174,511 - DvMF_2517 0.81 -2.6
3,174,521 - DvMF_2517 0.82 -4.3
3,174,844 + -0.1
3,175,194 + flgG DvMF_2518 0.30 -2.5
3,175,290 + flgG DvMF_2518 0.43 -2.7
3,175,436 - flgG DvMF_2518 0.61 -2.7
3,175,554 + flgG DvMF_2518 0.76 -2.4
3,175,601 - flgG DvMF_2518 0.82 -2.7

Or see this region's nucleotide sequence