Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2329

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2328 and DvMF_2329 are separated by 509 nucleotidesDvMF_2329 and DvMF_2330 are separated by 69 nucleotides DvMF_2328: DvMF_2328 - glycosyl transferase group 1 (RefSeq), at 2,933,424 to 2,936,039 _2328 DvMF_2329: DvMF_2329 - glycosyl transferase family 2 (RefSeq), at 2,936,549 to 2,937,583 _2329 DvMF_2330: DvMF_2330 - PP-loop domain protein (RefSeq), at 2,937,653 to 2,938,588 _2330 Position (kb) 2936 2937 2938Strain fitness (log2 ratio) -2 -1 0 1at 2935.554 kb on + strand, within DvMF_2328at 2935.555 kb on - strand, within DvMF_2328at 2935.657 kb on - strand, within DvMF_2328at 2935.703 kb on - strand, within DvMF_2328at 2935.905 kb on - strandat 2935.947 kb on + strandat 2935.984 kb on - strandat 2936.138 kb on + strandat 2936.194 kb on - strandat 2936.259 kb on - strandat 2936.261 kb on + strandat 2936.271 kb on - strandat 2936.464 kb on - strandat 2936.728 kb on + strand, within DvMF_2329at 2936.728 kb on + strand, within DvMF_2329at 2936.754 kb on + strand, within DvMF_2329at 2936.899 kb on - strand, within DvMF_2329at 2937.056 kb on + strand, within DvMF_2329at 2937.061 kb on + strand, within DvMF_2329at 2937.323 kb on + strand, within DvMF_2329at 2937.429 kb on - strand, within DvMF_2329at 2937.772 kb on + strand, within DvMF_2330at 2938.047 kb on - strand, within DvMF_2330at 2938.284 kb on - strand, within DvMF_2330at 2938.379 kb on - strand, within DvMF_2330

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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2,935,554 + DvMF_2328 0.81 -0.2
2,935,555 - DvMF_2328 0.81 -0.2
2,935,657 - DvMF_2328 0.85 -1.1
2,935,703 - DvMF_2328 0.87 -0.6
2,935,905 - -0.2
2,935,947 + -0.9
2,935,984 - -0.4
2,936,138 + -0.8
2,936,194 - -0.2
2,936,259 - -0.0
2,936,261 + -0.7
2,936,271 - -0.1
2,936,464 - -0.6
2,936,728 + DvMF_2329 0.17 -0.5
2,936,728 + DvMF_2329 0.17 -0.7
2,936,754 + DvMF_2329 0.20 +0.3
2,936,899 - DvMF_2329 0.34 -0.6
2,937,056 + DvMF_2329 0.49 -2.0
2,937,061 + DvMF_2329 0.49 -1.4
2,937,323 + DvMF_2329 0.75 -2.0
2,937,429 - DvMF_2329 0.85 -0.5
2,937,772 + DvMF_2330 0.13 -0.0
2,938,047 - DvMF_2330 0.42 +0.5
2,938,284 - DvMF_2330 0.67 -0.1
2,938,379 - DvMF_2330 0.78 -0.6

Or see this region's nucleotide sequence