Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2326 and DvMF_2327 are separated by 211 nucleotides DvMF_2327 and DvMF_2328 are separated by 336 nucleotides
DvMF_2326: DvMF_2326 - TPR repeat-containing protein (RefSeq), at 2,930,828 to 2,931,592
_2326
DvMF_2327: DvMF_2327 - pyridine nucleotide-disulfide oxidoreductase family protein (RefSeq), at 2,931,804 to 2,933,087
_2327
DvMF_2328: DvMF_2328 - glycosyl transferase group 1 (RefSeq), at 2,933,424 to 2,936,039
_2328
Position (kb)
2931
2932
2933
2934 Strain fitness (log2 ratio)
-1
0
1 at 2931.200 kb on + strand, within DvMF_2326 at 2931.503 kb on + strand, within DvMF_2326 at 2931.582 kb on + strand at 2931.590 kb on - strand at 2931.612 kb on + strand at 2931.620 kb on - strand at 2931.690 kb on + strand at 2931.768 kb on + strand at 2931.773 kb on + strand at 2931.788 kb on + strand at 2932.090 kb on - strand, within DvMF_2327 at 2932.094 kb on + strand, within DvMF_2327 at 2932.134 kb on + strand, within DvMF_2327 at 2932.139 kb on + strand, within DvMF_2327 at 2932.183 kb on + strand, within DvMF_2327 at 2932.191 kb on - strand, within DvMF_2327 at 2932.256 kb on - strand, within DvMF_2327 at 2932.345 kb on + strand, within DvMF_2327 at 2932.390 kb on + strand, within DvMF_2327 at 2932.543 kb on + strand, within DvMF_2327 at 2932.571 kb on - strand, within DvMF_2327 at 2932.709 kb on - strand, within DvMF_2327 at 2933.203 kb on + strand at 2933.211 kb on - strand at 2933.213 kb on + strand at 2933.216 kb on - strand at 2933.465 kb on - strand at 2933.766 kb on - strand, within DvMF_2328 at 2933.989 kb on + strand, within DvMF_2328 at 2933.989 kb on + strand, within DvMF_2328 at 2933.997 kb on - strand, within DvMF_2328 at 2934.014 kb on + strand, within DvMF_2328
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 2,931,200 + DvMF_2326 0.49 -0.3 2,931,503 + DvMF_2326 0.88 -0.3 2,931,582 + -0.1 2,931,590 - -0.3 2,931,612 + -0.4 2,931,620 - +0.4 2,931,690 + +0.6 2,931,768 + -0.6 2,931,773 + -0.4 2,931,788 + -0.4 2,932,090 - DvMF_2327 0.22 -0.0 2,932,094 + DvMF_2327 0.23 -0.2 2,932,134 + DvMF_2327 0.26 -0.0 2,932,139 + DvMF_2327 0.26 -0.6 2,932,183 + DvMF_2327 0.30 +0.7 2,932,191 - DvMF_2327 0.30 -0.4 2,932,256 - DvMF_2327 0.35 -0.5 2,932,345 + DvMF_2327 0.42 +0.4 2,932,390 + DvMF_2327 0.46 +0.5 2,932,543 + DvMF_2327 0.58 -0.2 2,932,571 - DvMF_2327 0.60 +0.0 2,932,709 - DvMF_2327 0.70 -0.3 2,933,203 + -0.4 2,933,211 - -0.1 2,933,213 + -0.6 2,933,216 - +0.5 2,933,465 - -0.3 2,933,766 - DvMF_2328 0.13 -0.4 2,933,989 + DvMF_2328 0.22 -0.5 2,933,989 + DvMF_2328 0.22 -0.0 2,933,997 - DvMF_2328 0.22 -0.2 2,934,014 + DvMF_2328 0.23 -0.5
Or see this region's nucleotide sequence