Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2231

Experiment: 6 days starvation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2230 and DvMF_2231 are separated by 155 nucleotidesDvMF_2231 and DvMF_2232 are separated by 102 nucleotides DvMF_2230: DvMF_2230 - hydrolase, TatD family (RefSeq), at 2,791,493 to 2,792,314 _2230 DvMF_2231: DvMF_2231 - protein of unknown function DUF309 (RefSeq), at 2,792,470 to 2,792,892 _2231 DvMF_2232: DvMF_2232 - carbon monoxide dehydrogenase accessory protein CooC, putative (RefSeq), at 2,792,995 to 2,793,846 _2232 Position (kb) 2792 2793Strain fitness (log2 ratio) -1 0 1at 2791.607 kb on + strand, within DvMF_2230at 2791.632 kb on + strand, within DvMF_2230at 2791.650 kb on - strand, within DvMF_2230at 2791.672 kb on - strand, within DvMF_2230at 2791.730 kb on + strand, within DvMF_2230at 2791.753 kb on - strand, within DvMF_2230at 2791.801 kb on - strand, within DvMF_2230at 2791.917 kb on + strand, within DvMF_2230at 2792.309 kb on + strandat 2792.473 kb on - strandat 2792.598 kb on - strand, within DvMF_2231at 2792.637 kb on + strand, within DvMF_2231at 2792.823 kb on + strand, within DvMF_2231at 2793.013 kb on - strandat 2793.108 kb on + strand, within DvMF_2232at 2793.276 kb on + strand, within DvMF_2232at 2793.276 kb on + strand, within DvMF_2232at 2793.276 kb on + strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.291 kb on - strand, within DvMF_2232at 2793.466 kb on - strand, within DvMF_2232at 2793.565 kb on + strand, within DvMF_2232at 2793.624 kb on + strand, within DvMF_2232at 2793.708 kb on - strand, within DvMF_2232at 2793.727 kb on - strand, within DvMF_2232

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
remove
2,791,607 + DvMF_2230 0.14 +1.0
2,791,632 + DvMF_2230 0.17 -0.0
2,791,650 - DvMF_2230 0.19 -0.3
2,791,672 - DvMF_2230 0.22 -0.3
2,791,730 + DvMF_2230 0.29 -0.4
2,791,753 - DvMF_2230 0.32 +0.3
2,791,801 - DvMF_2230 0.37 -1.0
2,791,917 + DvMF_2230 0.52 -0.4
2,792,309 + -0.4
2,792,473 - -0.2
2,792,598 - DvMF_2231 0.30 -1.0
2,792,637 + DvMF_2231 0.39 -1.0
2,792,823 + DvMF_2231 0.83 -0.7
2,793,013 - -1.4
2,793,108 + DvMF_2232 0.13 -0.3
2,793,276 + DvMF_2232 0.33 -0.6
2,793,276 + DvMF_2232 0.33 -0.3
2,793,276 + DvMF_2232 0.33 -0.4
2,793,284 - DvMF_2232 0.34 -0.3
2,793,284 - DvMF_2232 0.34 -0.3
2,793,284 - DvMF_2232 0.34 -0.2
2,793,284 - DvMF_2232 0.34 -0.0
2,793,284 - DvMF_2232 0.34 -0.1
2,793,284 - DvMF_2232 0.34 -0.7
2,793,284 - DvMF_2232 0.34 -0.9
2,793,291 - DvMF_2232 0.35 -0.3
2,793,466 - DvMF_2232 0.55 -0.1
2,793,565 + DvMF_2232 0.67 -0.9
2,793,624 + DvMF_2232 0.74 -1.2
2,793,708 - DvMF_2232 0.84 -0.1
2,793,727 - DvMF_2232 0.86 -0.3

Or see this region's nucleotide sequence