Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2208 and DvMF_2209 are separated by 292 nucleotides DvMF_2209 and DvMF_2210 are separated by 24 nucleotides DvMF_2210 and DvMF_2211 are separated by 1 nucleotides
DvMF_2208: DvMF_2208 - alanine racemase domain protein (RefSeq), at 2,762,163 to 2,762,981
_2208
DvMF_2209: DvMF_2209 - MotA/TolQ/ExbB proton channel (RefSeq), at 2,763,274 to 2,764,032
_2209
DvMF_2210: DvMF_2210 - OmpA/MotB domain protein (RefSeq), at 2,764,057 to 2,764,980
_2210
DvMF_2211: DvMF_2211 - OmpA/MotB domain protein (RefSeq), at 2,764,982 to 2,765,917
_2211
Position (kb)
2763
2764
2765 Strain fitness (log2 ratio)
-1
0
1 at 2762.327 kb on + strand, within DvMF_2208 at 2762.549 kb on + strand, within DvMF_2208 at 2762.555 kb on - strand, within DvMF_2208 at 2762.584 kb on + strand, within DvMF_2208 at 2763.341 kb on - strand at 2763.581 kb on - strand, within DvMF_2209 at 2763.849 kb on + strand, within DvMF_2209 at 2764.049 kb on - strand at 2764.237 kb on + strand, within DvMF_2210 at 2764.237 kb on + strand, within DvMF_2210 at 2764.247 kb on + strand, within DvMF_2210 at 2764.255 kb on - strand, within DvMF_2210 at 2764.636 kb on + strand, within DvMF_2210 at 2764.641 kb on + strand, within DvMF_2210 at 2764.738 kb on - strand, within DvMF_2210 at 2764.819 kb on - strand, within DvMF_2210 at 2764.821 kb on + strand, within DvMF_2210 at 2764.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 2,762,327 + DvMF_2208 0.20 -1.4 2,762,549 + DvMF_2208 0.47 -1.5 2,762,555 - DvMF_2208 0.48 -1.4 2,762,584 + DvMF_2208 0.51 -1.0 2,763,341 - -0.7 2,763,581 - DvMF_2209 0.40 -0.5 2,763,849 + DvMF_2209 0.76 +1.0 2,764,049 - -0.1 2,764,237 + DvMF_2210 0.19 -0.8 2,764,237 + DvMF_2210 0.19 +0.2 2,764,247 + DvMF_2210 0.21 -0.2 2,764,255 - DvMF_2210 0.21 -0.4 2,764,636 + DvMF_2210 0.63 -0.1 2,764,641 + DvMF_2210 0.63 -0.4 2,764,738 - DvMF_2210 0.74 -1.1 2,764,819 - DvMF_2210 0.82 -0.8 2,764,821 + DvMF_2210 0.83 -0.5 2,764,929 - -0.2
Or see this region's nucleotide sequence