Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2011

Experiment: 6 days starvation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2009 and DvMF_2010 are separated by 243 nucleotidesDvMF_2010 and DvMF_2011 are separated by 30 nucleotidesDvMF_2011 and DvMF_2012 overlap by 47 nucleotidesDvMF_2012 and DvMF_2013 are separated by 104 nucleotides DvMF_2009: DvMF_2009 - flagellar basal body-associated protein FliL (RefSeq), at 2,488,545 to 2,489,330 _2009 DvMF_2010: DvMF_2010 - response regulator receiver protein (RefSeq), at 2,489,574 to 2,489,954 _2010 DvMF_2011: DvMF_2011 - RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq), at 2,489,985 to 2,490,782 _2011 DvMF_2012: DvMF_2012 - Cobyrinic acid ac-diamide synthase (RefSeq), at 2,490,736 to 2,491,551 _2012 DvMF_2013: DvMF_2013 - flagellar biosynthesis protein FlhF, putative (RefSeq), at 2,491,656 to 2,492,915 _2013 Position (kb) 2489 2490 2491Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2489.098 kb on - strand, within DvMF_2009at 2489.105 kb on - strand, within DvMF_2009at 2489.317 kb on + strandat 2489.391 kb on - strandat 2489.624 kb on + strand, within DvMF_2010at 2489.970 kb on - strandat 2490.560 kb on + strand, within DvMF_2011at 2490.657 kb on + strand, within DvMF_2011at 2491.654 kb on + strandat 2491.662 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
remove
2,489,098 - DvMF_2009 0.70 +0.3
2,489,105 - DvMF_2009 0.71 -0.3
2,489,317 + +0.6
2,489,391 - -0.1
2,489,624 + DvMF_2010 0.13 -1.5
2,489,970 - -0.7
2,490,560 + DvMF_2011 0.72 -5.1
2,490,657 + DvMF_2011 0.84 -4.7
2,491,654 + -0.6
2,491,662 - +0.2

Or see this region's nucleotide sequence