Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1941

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1940 and DvMF_1941 overlap by 81 nucleotidesDvMF_1941 and DvMF_1942 are separated by 418 nucleotides DvMF_1940: DvMF_1940 - Lytic transglycosylase catalytic (RefSeq), at 2,394,830 to 2,396,575 _1940 DvMF_1941: DvMF_1941 - hypothetical protein (RefSeq), at 2,396,495 to 2,396,872 _1941 DvMF_1942: DvMF_1942 - IMP cyclohydrolase (RefSeq), at 2,397,291 to 2,398,583 _1942 Position (kb) 2396 2397Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2395.515 kb on + strand, within DvMF_1940at 2395.548 kb on + strand, within DvMF_1940at 2395.568 kb on - strand, within DvMF_1940at 2395.574 kb on + strand, within DvMF_1940at 2395.801 kb on - strand, within DvMF_1940at 2396.046 kb on - strand, within DvMF_1940at 2396.140 kb on + strand, within DvMF_1940at 2396.140 kb on + strand, within DvMF_1940at 2396.143 kb on - strand, within DvMF_1940at 2396.308 kb on - strand, within DvMF_1940at 2396.629 kb on - strand, within DvMF_1941at 2396.730 kb on - strand, within DvMF_1941at 2396.775 kb on - strand, within DvMF_1941at 2396.960 kb on - strandat 2396.976 kb on + strandat 2397.367 kb on + strandat 2397.387 kb on + strandat 2397.443 kb on - strand, within DvMF_1942at 2397.728 kb on + strand, within DvMF_1942at 2397.736 kb on - strand, within DvMF_1942at 2397.743 kb on - strand, within DvMF_1942at 2397.854 kb on + strand, within DvMF_1942

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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2,395,515 + DvMF_1940 0.39 -0.2
2,395,548 + DvMF_1940 0.41 -0.5
2,395,568 - DvMF_1940 0.42 -0.2
2,395,574 + DvMF_1940 0.43 -0.3
2,395,801 - DvMF_1940 0.56 -0.5
2,396,046 - DvMF_1940 0.70 -3.6
2,396,140 + DvMF_1940 0.75 -0.3
2,396,140 + DvMF_1940 0.75 -1.0
2,396,143 - DvMF_1940 0.75 -0.5
2,396,308 - DvMF_1940 0.85 -1.0
2,396,629 - DvMF_1941 0.35 +0.8
2,396,730 - DvMF_1941 0.62 +0.0
2,396,775 - DvMF_1941 0.74 +0.7
2,396,960 - -0.3
2,396,976 + -0.5
2,397,367 + -4.1
2,397,387 + -3.6
2,397,443 - DvMF_1942 0.12 -6.4
2,397,728 + DvMF_1942 0.34 -5.5
2,397,736 - DvMF_1942 0.34 -2.9
2,397,743 - DvMF_1942 0.35 -5.4
2,397,854 + DvMF_1942 0.44 -6.5

Or see this region's nucleotide sequence