Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1788 and DvMF_1789 are separated by 176 nucleotides DvMF_1789 and DvMF_1790 are separated by 57 nucleotides DvMF_1790 and DvMF_1791 are separated by 228 nucleotides
DvMF_1788: DvMF_1788 - SNARE associated Golgi protein (RefSeq), at 2,188,081 to 2,189,025
_1788
DvMF_1789: DvMF_1789 - phosphatidylserine decarboxylase (RefSeq), at 2,189,202 to 2,189,846
_1789
DvMF_1790: DvMF_1790 - CDP-diacylglycerol/serine O-phosphatidyltransferase (RefSeq), at 2,189,904 to 2,190,653
_1790
DvMF_1791: DvMF_1791 - 2-isopropylmalate synthase (RefSeq), at 2,190,882 to 2,192,426
_1791
Position (kb)
2189
2190
2191 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2188.977 kb on + strand at 2190.647 kb on + strand at 2190.713 kb on + strand at 2190.860 kb on - strand at 2191.060 kb on - strand, within DvMF_1791 at 2191.090 kb on + strand, within DvMF_1791 at 2191.098 kb on - strand, within DvMF_1791 at 2191.238 kb on - strand, within DvMF_1791 at 2191.420 kb on - strand, within DvMF_1791
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 2,188,977 + +0.4 2,190,647 + +0.7 2,190,713 + -0.5 2,190,860 - -0.1 2,191,060 - DvMF_1791 0.12 -5.7 2,191,090 + DvMF_1791 0.13 -5.4 2,191,098 - DvMF_1791 0.14 -5.8 2,191,238 - DvMF_1791 0.23 -6.3 2,191,420 - DvMF_1791 0.35 -5.9
Or see this region's nucleotide sequence