Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1768

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1766 and DvMF_1767 are separated by 1 nucleotidesDvMF_1767 and DvMF_1768 overlap by 4 nucleotidesDvMF_1768 and DvMF_1769 are separated by 2 nucleotidesDvMF_1769 and DvMF_1770 are separated by 72 nucleotides DvMF_1766: DvMF_1766 - sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family (RefSeq), at 2,162,420 to 2,164,123 _1766 DvMF_1767: DvMF_1767 - hypothetical protein (RefSeq), at 2,164,125 to 2,164,472 _1767 DvMF_1768: DvMF_1768 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,164,469 to 2,166,199 _1768 DvMF_1769: DvMF_1769 - response regulator receiver protein (RefSeq), at 2,166,202 to 2,166,591 _1769 DvMF_1770: DvMF_1770 - hypothetical protein (RefSeq), at 2,166,664 to 2,167,398 _1770 Position (kb) 2164 2165 2166 2167Strain fitness (log2 ratio) -3 -2 -1 0 1at 2163.483 kb on + strand, within DvMF_1766at 2163.574 kb on - strand, within DvMF_1766at 2163.710 kb on + strand, within DvMF_1766at 2163.727 kb on + strand, within DvMF_1766at 2163.728 kb on - strand, within DvMF_1766at 2163.780 kb on + strand, within DvMF_1766at 2163.874 kb on + strand, within DvMF_1766at 2163.990 kb on - strandat 2164.125 kb on - strandat 2164.154 kb on - strandat 2164.342 kb on + strand, within DvMF_1767at 2164.423 kb on - strand, within DvMF_1767at 2164.651 kb on - strand, within DvMF_1768at 2164.790 kb on - strand, within DvMF_1768at 2164.942 kb on + strand, within DvMF_1768at 2164.950 kb on - strand, within DvMF_1768at 2164.950 kb on - strand, within DvMF_1768at 2164.950 kb on - strand, within DvMF_1768at 2165.009 kb on + strand, within DvMF_1768at 2165.080 kb on + strand, within DvMF_1768at 2165.211 kb on + strand, within DvMF_1768at 2165.234 kb on - strand, within DvMF_1768at 2165.498 kb on - strand, within DvMF_1768at 2165.664 kb on - strand, within DvMF_1768at 2165.742 kb on - strand, within DvMF_1768at 2166.026 kb on - strand, within DvMF_1768at 2166.341 kb on + strand, within DvMF_1769at 2166.815 kb on - strand, within DvMF_1770at 2166.817 kb on + strand, within DvMF_1770at 2166.845 kb on - strand, within DvMF_1770at 2166.845 kb on - strand, within DvMF_1770at 2167.061 kb on + strand, within DvMF_1770at 2167.063 kb on - strand, within DvMF_1770

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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2,163,483 + DvMF_1766 0.62 -1.6
2,163,574 - DvMF_1766 0.68 -1.1
2,163,710 + DvMF_1766 0.76 -0.8
2,163,727 + DvMF_1766 0.77 -1.3
2,163,728 - DvMF_1766 0.77 -1.7
2,163,780 + DvMF_1766 0.80 -1.1
2,163,874 + DvMF_1766 0.85 -1.6
2,163,990 - -2.2
2,164,125 - -0.7
2,164,154 - -0.1
2,164,342 + DvMF_1767 0.62 -0.3
2,164,423 - DvMF_1767 0.86 -1.2
2,164,651 - DvMF_1768 0.11 -1.3
2,164,790 - DvMF_1768 0.19 -2.8
2,164,942 + DvMF_1768 0.27 -1.5
2,164,950 - DvMF_1768 0.28 -2.6
2,164,950 - DvMF_1768 0.28 -1.2
2,164,950 - DvMF_1768 0.28 -1.5
2,165,009 + DvMF_1768 0.31 -2.0
2,165,080 + DvMF_1768 0.35 -0.6
2,165,211 + DvMF_1768 0.43 -2.2
2,165,234 - DvMF_1768 0.44 -0.9
2,165,498 - DvMF_1768 0.59 -0.4
2,165,664 - DvMF_1768 0.69 -2.4
2,165,742 - DvMF_1768 0.74 -2.5
2,166,026 - DvMF_1768 0.90 -1.7
2,166,341 + DvMF_1769 0.36 -2.4
2,166,815 - DvMF_1770 0.21 -0.8
2,166,817 + DvMF_1770 0.21 -0.3
2,166,845 - DvMF_1770 0.25 -1.3
2,166,845 - DvMF_1770 0.25 -0.9
2,167,061 + DvMF_1770 0.54 -0.6
2,167,063 - DvMF_1770 0.54 -0.8

Or see this region's nucleotide sequence