Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1766 and DvMF_1767 are separated by 1 nucleotides DvMF_1767 and DvMF_1768 overlap by 4 nucleotides DvMF_1768 and DvMF_1769 are separated by 2 nucleotides DvMF_1769 and DvMF_1770 are separated by 72 nucleotides
DvMF_1766: DvMF_1766 - sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family (RefSeq), at 2,162,420 to 2,164,123
_1766
DvMF_1767: DvMF_1767 - hypothetical protein (RefSeq), at 2,164,125 to 2,164,472
_1767
DvMF_1768: DvMF_1768 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,164,469 to 2,166,199
_1768
DvMF_1769: DvMF_1769 - response regulator receiver protein (RefSeq), at 2,166,202 to 2,166,591
_1769
DvMF_1770: DvMF_1770 - hypothetical protein (RefSeq), at 2,166,664 to 2,167,398
_1770
Position (kb)
2164
2165
2166
2167 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2163.483 kb on + strand, within DvMF_1766 at 2163.574 kb on - strand, within DvMF_1766 at 2163.710 kb on + strand, within DvMF_1766 at 2163.727 kb on + strand, within DvMF_1766 at 2163.728 kb on - strand, within DvMF_1766 at 2163.780 kb on + strand, within DvMF_1766 at 2163.874 kb on + strand, within DvMF_1766 at 2163.990 kb on - strand at 2164.125 kb on - strand at 2164.154 kb on - strand at 2164.342 kb on + strand, within DvMF_1767 at 2164.423 kb on - strand, within DvMF_1767 at 2164.651 kb on - strand, within DvMF_1768 at 2164.790 kb on - strand, within DvMF_1768 at 2164.942 kb on + strand, within DvMF_1768 at 2164.950 kb on - strand, within DvMF_1768 at 2164.950 kb on - strand, within DvMF_1768 at 2164.950 kb on - strand, within DvMF_1768 at 2165.009 kb on + strand, within DvMF_1768 at 2165.080 kb on + strand, within DvMF_1768 at 2165.211 kb on + strand, within DvMF_1768 at 2165.234 kb on - strand, within DvMF_1768 at 2165.498 kb on - strand, within DvMF_1768 at 2165.664 kb on - strand, within DvMF_1768 at 2165.742 kb on - strand, within DvMF_1768 at 2166.026 kb on - strand, within DvMF_1768 at 2166.341 kb on + strand, within DvMF_1769 at 2166.815 kb on - strand, within DvMF_1770 at 2166.817 kb on + strand, within DvMF_1770 at 2166.845 kb on - strand, within DvMF_1770 at 2166.845 kb on - strand, within DvMF_1770 at 2167.061 kb on + strand, within DvMF_1770 at 2167.063 kb on - strand, within DvMF_1770
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 2,163,483 + DvMF_1766 0.62 -1.6 2,163,574 - DvMF_1766 0.68 -1.1 2,163,710 + DvMF_1766 0.76 -0.8 2,163,727 + DvMF_1766 0.77 -1.3 2,163,728 - DvMF_1766 0.77 -1.7 2,163,780 + DvMF_1766 0.80 -1.1 2,163,874 + DvMF_1766 0.85 -1.6 2,163,990 - -2.2 2,164,125 - -0.7 2,164,154 - -0.1 2,164,342 + DvMF_1767 0.62 -0.3 2,164,423 - DvMF_1767 0.86 -1.2 2,164,651 - DvMF_1768 0.11 -1.3 2,164,790 - DvMF_1768 0.19 -2.8 2,164,942 + DvMF_1768 0.27 -1.5 2,164,950 - DvMF_1768 0.28 -2.6 2,164,950 - DvMF_1768 0.28 -1.2 2,164,950 - DvMF_1768 0.28 -1.5 2,165,009 + DvMF_1768 0.31 -2.0 2,165,080 + DvMF_1768 0.35 -0.6 2,165,211 + DvMF_1768 0.43 -2.2 2,165,234 - DvMF_1768 0.44 -0.9 2,165,498 - DvMF_1768 0.59 -0.4 2,165,664 - DvMF_1768 0.69 -2.4 2,165,742 - DvMF_1768 0.74 -2.5 2,166,026 - DvMF_1768 0.90 -1.7 2,166,341 + DvMF_1769 0.36 -2.4 2,166,815 - DvMF_1770 0.21 -0.8 2,166,817 + DvMF_1770 0.21 -0.3 2,166,845 - DvMF_1770 0.25 -1.3 2,166,845 - DvMF_1770 0.25 -0.9 2,167,061 + DvMF_1770 0.54 -0.6 2,167,063 - DvMF_1770 0.54 -0.8
Or see this region's nucleotide sequence