Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1750

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1749 and DvMF_1750 are separated by 34 nucleotidesDvMF_1750 and DvMF_1751 are separated by 304 nucleotides DvMF_1749: DvMF_1749 - prephenate dehydratase (RefSeq), at 2,137,049 to 2,138,305 _1749 DvMF_1750: DvMF_1750 - 3-dehydroquinate synthase (RefSeq), at 2,138,340 to 2,139,311 _1750 DvMF_1751: DvMF_1751 - fructose-bisphosphate aldolase (RefSeq), at 2,139,616 to 2,140,413 _1751 Position (kb) 2138 2139 2140Strain fitness (log2 ratio) -3 -2 -1 0 1at 2139.395 kb on + strandat 2139.411 kb on - strandat 2139.573 kb on + strandat 2139.631 kb on + strandat 2139.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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2,139,395 + -0.4
2,139,411 - -0.5
2,139,573 + -0.4
2,139,631 + -3.4
2,139,632 + -2.8

Or see this region's nucleotide sequence