Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1740

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1739 and trpA are separated by 382 nucleotidestrpA and DvMF_1741 overlap by 4 nucleotides DvMF_1739: DvMF_1739 - isocitrate/isopropylmalate dehydrogenase (RefSeq), at 2,125,994 to 2,127,142 _1739 DvMF_1740: trpA - tryptophan synthase subunit alpha (RefSeq), at 2,127,525 to 2,128,337 trpA DvMF_1741: DvMF_1741 - tryptophan synthase subunit beta (RefSeq), at 2,128,334 to 2,129,518 _1741 Position (kb) 2127 2128 2129Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2127.519 kb on - strandat 2127.524 kb on - strandat 2127.747 kb on + strand, within trpAat 2128.203 kb on + strand, within trpAat 2128.412 kb on - strandat 2128.451 kb on - strandat 2128.583 kb on - strand, within DvMF_1741at 2128.616 kb on - strand, within DvMF_1741at 2128.646 kb on + strand, within DvMF_1741at 2128.703 kb on - strand, within DvMF_1741at 2128.726 kb on + strand, within DvMF_1741at 2128.951 kb on - strand, within DvMF_1741at 2128.973 kb on - strand, within DvMF_1741at 2129.072 kb on + strand, within DvMF_1741at 2129.092 kb on + strand, within DvMF_1741at 2129.248 kb on + strand, within DvMF_1741at 2129.251 kb on - strand, within DvMF_1741at 2129.335 kb on + strand, within DvMF_1741

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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2,127,519 - +0.4
2,127,524 - -0.8
2,127,747 + trpA DvMF_1740 0.27 -5.4
2,128,203 + trpA DvMF_1740 0.83 -6.4
2,128,412 - -4.0
2,128,451 - -1.5
2,128,583 - DvMF_1741 0.21 -5.9
2,128,616 - DvMF_1741 0.24 -4.2
2,128,646 + DvMF_1741 0.26 -6.8
2,128,703 - DvMF_1741 0.31 -6.1
2,128,726 + DvMF_1741 0.33 -5.4
2,128,951 - DvMF_1741 0.52 -7.1
2,128,973 - DvMF_1741 0.54 -5.2
2,129,072 + DvMF_1741 0.62 -8.1
2,129,092 + DvMF_1741 0.64 -5.7
2,129,248 + DvMF_1741 0.77 -7.6
2,129,251 - DvMF_1741 0.77 -4.9
2,129,335 + DvMF_1741 0.84 -6.2

Or see this region's nucleotide sequence