Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1534

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1532 and DvMF_1533 are separated by 87 nucleotidesDvMF_1533 and DvMF_1534 overlap by 17 nucleotidesDvMF_1534 and DvMF_1535 are separated by 330 nucleotides DvMF_1532: DvMF_1532 - carboxynorspermidine decarboxylase (RefSeq), at 1,889,088 to 1,890,305 _1532 DvMF_1533: DvMF_1533 - hypothetical protein (RefSeq), at 1,890,393 to 1,891,082 _1533 DvMF_1534: DvMF_1534 - hypothetical protein (RefSeq), at 1,891,066 to 1,891,599 _1534 DvMF_1535: DvMF_1535 - Saccharopine dehydrogenase (RefSeq), at 1,891,930 to 1,893,120 _1535 Position (kb) 1891 1892Strain fitness (log2 ratio) -2 -1 0 1at 1890.074 kb on + strand, within DvMF_1532at 1890.197 kb on - strandat 1890.309 kb on + strandat 1890.390 kb on + strandat 1890.570 kb on - strand, within DvMF_1533at 1890.664 kb on + strand, within DvMF_1533at 1890.720 kb on + strand, within DvMF_1533at 1890.815 kb on + strand, within DvMF_1533at 1891.063 kb on + strandat 1891.691 kb on + strandat 1891.771 kb on - strandat 1891.927 kb on - strandat 1892.153 kb on + strand, within DvMF_1535at 1892.161 kb on - strand, within DvMF_1535at 1892.308 kb on + strand, within DvMF_1535at 1892.392 kb on + strand, within DvMF_1535at 1892.528 kb on - strand, within DvMF_1535at 1892.528 kb on - strand, within DvMF_1535

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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1,890,074 + DvMF_1532 0.81 -2.6
1,890,197 - -1.6
1,890,309 + -0.5
1,890,390 + -0.7
1,890,570 - DvMF_1533 0.26 +0.2
1,890,664 + DvMF_1533 0.39 -0.6
1,890,720 + DvMF_1533 0.47 -0.3
1,890,815 + DvMF_1533 0.61 -1.3
1,891,063 + -0.5
1,891,691 + -0.5
1,891,771 - +0.1
1,891,927 - +0.1
1,892,153 + DvMF_1535 0.19 -1.3
1,892,161 - DvMF_1535 0.19 -1.7
1,892,308 + DvMF_1535 0.32 -2.2
1,892,392 + DvMF_1535 0.39 -2.1
1,892,528 - DvMF_1535 0.50 -2.4
1,892,528 - DvMF_1535 0.50 -2.2

Or see this region's nucleotide sequence