Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1169 and DvMF_1170 are separated by 410 nucleotides DvMF_1170 and DvMF_1171 are separated by 30 nucleotides DvMF_1171 and DvMF_1172 are separated by 124 nucleotides
DvMF_1169: DvMF_1169 - hypothetical protein (RefSeq), at 1,443,829 to 1,446,888
_1169
DvMF_1170: DvMF_1170 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 1,447,299 to 1,448,294
_1170
DvMF_1171: DvMF_1171 - C_GCAxxG_C_C family protein (RefSeq), at 1,448,325 to 1,449,098
_1171
DvMF_1172: DvMF_1172 - Rhodanese domain protein (RefSeq), at 1,449,223 to 1,449,744
_1172
Position (kb)
1447
1448
1449 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1446.358 kb on - strand, within DvMF_1169 at 1446.479 kb on - strand, within DvMF_1169 at 1446.697 kb on + strand at 1446.726 kb on - strand at 1446.795 kb on - strand at 1447.093 kb on - strand at 1447.238 kb on + strand at 1447.246 kb on - strand at 1447.246 kb on - strand at 1447.519 kb on - strand, within DvMF_1170 at 1447.741 kb on + strand at 1447.961 kb on - strand, within DvMF_1170 at 1448.042 kb on + strand, within DvMF_1170 at 1448.105 kb on + strand, within DvMF_1170 at 1448.389 kb on - strand at 1448.919 kb on - strand, within DvMF_1171 at 1448.971 kb on - strand, within DvMF_1171 at 1449.000 kb on + strand, within DvMF_1171 at 1449.244 kb on + strand at 1449.244 kb on + strand at 1449.252 kb on - strand at 1449.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 1,446,358 - DvMF_1169 0.83 -0.5 1,446,479 - DvMF_1169 0.87 -0.6 1,446,697 + -0.8 1,446,726 - -3.1 1,446,795 - -1.0 1,447,093 - -0.7 1,447,238 + -1.4 1,447,246 - -0.2 1,447,246 - -0.7 1,447,519 - DvMF_1170 0.22 -0.2 1,447,741 + -0.3 1,447,961 - DvMF_1170 0.66 -0.6 1,448,042 + DvMF_1170 0.75 -0.2 1,448,105 + DvMF_1170 0.81 -0.0 1,448,389 - -0.5 1,448,919 - DvMF_1171 0.77 -0.5 1,448,971 - DvMF_1171 0.83 -0.1 1,449,000 + DvMF_1171 0.87 -2.2 1,449,244 + +0.0 1,449,244 + -0.7 1,449,252 - -0.2 1,449,252 - -0.9
Or see this region's nucleotide sequence