Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0871 and DvMF_0872 are separated by 52 nucleotides DvMF_0872 and DvMF_0873 are separated by 331 nucleotides DvMF_0873 and DvMF_0874 are separated by 292 nucleotides
DvMF_0871: DvMF_0871 - hypothetical protein (RefSeq), at 1,049,753 to 1,052,377
_0871
DvMF_0872: DvMF_0872 - hypothetical protein (RefSeq), at 1,052,430 to 1,052,792
_0872
DvMF_0873: DvMF_0873 - nuclease (SNase domain protein) (RefSeq), at 1,053,124 to 1,053,564
_0873
DvMF_0874: DvMF_0874 - sodium:neurotransmitter symporter (RefSeq), at 1,053,857 to 1,055,221
_0874
Position (kb)
1053
1054 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1052.136 kb on + strand at 1052.154 kb on + strand at 1052.725 kb on - strand, within DvMF_0872 at 1052.758 kb on - strand at 1052.995 kb on + strand at 1053.027 kb on + strand at 1053.275 kb on + strand, within DvMF_0873 at 1053.327 kb on + strand, within DvMF_0873 at 1053.364 kb on - strand, within DvMF_0873 at 1053.410 kb on - strand, within DvMF_0873 at 1053.425 kb on + strand, within DvMF_0873 at 1053.906 kb on - strand at 1054.552 kb on - strand, within DvMF_0874 at 1054.558 kb on + strand, within DvMF_0874
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 1,052,136 + -2.2 1,052,154 + -2.9 1,052,725 - DvMF_0872 0.81 -1.1 1,052,758 - -0.3 1,052,995 + +0.1 1,053,027 + -0.5 1,053,275 + DvMF_0873 0.34 -0.8 1,053,327 + DvMF_0873 0.46 -0.7 1,053,364 - DvMF_0873 0.54 -0.6 1,053,410 - DvMF_0873 0.65 -0.5 1,053,425 + DvMF_0873 0.68 -0.3 1,053,906 - -1.1 1,054,552 - DvMF_0874 0.51 -0.6 1,054,558 + DvMF_0874 0.51 -1.7
Or see this region's nucleotide sequence