Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0873

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0871 and DvMF_0872 are separated by 52 nucleotidesDvMF_0872 and DvMF_0873 are separated by 331 nucleotidesDvMF_0873 and DvMF_0874 are separated by 292 nucleotides DvMF_0871: DvMF_0871 - hypothetical protein (RefSeq), at 1,049,753 to 1,052,377 _0871 DvMF_0872: DvMF_0872 - hypothetical protein (RefSeq), at 1,052,430 to 1,052,792 _0872 DvMF_0873: DvMF_0873 - nuclease (SNase domain protein) (RefSeq), at 1,053,124 to 1,053,564 _0873 DvMF_0874: DvMF_0874 - sodium:neurotransmitter symporter (RefSeq), at 1,053,857 to 1,055,221 _0874 Position (kb) 1053 1054Strain fitness (log2 ratio) -3 -2 -1 0 1at 1052.136 kb on + strandat 1052.154 kb on + strandat 1052.725 kb on - strand, within DvMF_0872at 1052.758 kb on - strandat 1052.995 kb on + strandat 1053.027 kb on + strandat 1053.275 kb on + strand, within DvMF_0873at 1053.327 kb on + strand, within DvMF_0873at 1053.364 kb on - strand, within DvMF_0873at 1053.410 kb on - strand, within DvMF_0873at 1053.425 kb on + strand, within DvMF_0873at 1053.906 kb on - strandat 1054.552 kb on - strand, within DvMF_0874at 1054.558 kb on + strand, within DvMF_0874

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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1,052,136 + -2.2
1,052,154 + -2.9
1,052,725 - DvMF_0872 0.81 -1.1
1,052,758 - -0.3
1,052,995 + +0.1
1,053,027 + -0.5
1,053,275 + DvMF_0873 0.34 -0.8
1,053,327 + DvMF_0873 0.46 -0.7
1,053,364 - DvMF_0873 0.54 -0.6
1,053,410 - DvMF_0873 0.65 -0.5
1,053,425 + DvMF_0873 0.68 -0.3
1,053,906 - -1.1
1,054,552 - DvMF_0874 0.51 -0.6
1,054,558 + DvMF_0874 0.51 -1.7

Or see this region's nucleotide sequence