Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0798

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0797 and DvMF_0798 are separated by 325 nucleotidesDvMF_0798 and thiH are separated by 84 nucleotides DvMF_0797: DvMF_0797 - thiamine-phosphate pyrophosphorylase (RefSeq), at 961,619 to 962,272 _0797 DvMF_0798: DvMF_0798 - thiamine biosynthesis protein ThiF (RefSeq), at 962,598 to 963,218 _0798 DvMF_0799: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 963,303 to 964,547 thiH Position (kb) 962 963 964Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 961.915 kb on - strand, within DvMF_0797at 962.031 kb on - strand, within DvMF_0797at 962.064 kb on - strand, within DvMF_0797at 962.183 kb on + strand, within DvMF_0797at 962.417 kb on - strandat 962.504 kb on + strandat 962.583 kb on - strandat 962.859 kb on + strand, within DvMF_0798at 963.068 kb on + strand, within DvMF_0798at 963.186 kb on - strandat 963.734 kb on + strand, within thiHat 963.885 kb on + strand, within thiHat 963.893 kb on - strand, within thiHat 963.967 kb on + strand, within thiHat 963.980 kb on + strand, within thiHat 964.032 kb on - strand, within thiHat 964.065 kb on - strand, within thiH

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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961,915 - DvMF_0797 0.45 -5.2
962,031 - DvMF_0797 0.63 -6.3
962,064 - DvMF_0797 0.68 -2.8
962,183 + DvMF_0797 0.86 -6.6
962,417 - +0.1
962,504 + -0.4
962,583 - -0.3
962,859 + DvMF_0798 0.42 -4.8
963,068 + DvMF_0798 0.76 -5.4
963,186 - -4.5
963,734 + thiH DvMF_0799 0.35 -5.2
963,885 + thiH DvMF_0799 0.47 -4.4
963,893 - thiH DvMF_0799 0.47 -3.7
963,967 + thiH DvMF_0799 0.53 -4.3
963,980 + thiH DvMF_0799 0.54 -3.7
964,032 - thiH DvMF_0799 0.59 -4.2
964,065 - thiH DvMF_0799 0.61 -3.3

Or see this region's nucleotide sequence