Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0422 and DvMF_0423 are separated by 4 nucleotides DvMF_0423 and DvMF_0424 are separated by 247 nucleotides DvMF_0424 and DvMF_0425 are separated by 379 nucleotides DvMF_0425 and DvMF_0426 are separated by 9 nucleotides
DvMF_0422: DvMF_0422 - PTS system sorbose subfamily IIB component (RefSeq), at 497,493 to 497,957
_0422
DvMF_0423: DvMF_0423 - PTS system fructose subfamily IIA component (RefSeq), at 497,962 to 498,480
_0423
DvMF_0424: DvMF_0424 - hypothetical protein (RefSeq), at 498,728 to 499,609
_0424
DvMF_0425: DvMF_0425 - putative PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 499,989 to 500,438
_0425
DvMF_0426: DvMF_0426 - sigma 54 modulation protein/ribosomal protein S30EA (RefSeq), at 500,448 to 500,993
_0426
Position (kb) 498
499
500 Strain fitness (log2 ratio) -2
-1
0
1 at 497.773 kb on - strand, within DvMF_0422 at 498.096 kb on + strand, within DvMF_0423 at 498.096 kb on + strand, within DvMF_0423 at 498.270 kb on + strand, within DvMF_0423 at 498.286 kb on + strand, within DvMF_0423 at 498.418 kb on - strand, within DvMF_0423 at 498.438 kb on - strand at 498.438 kb on - strand at 498.455 kb on + strand at 499.120 kb on - strand, within DvMF_0424 at 499.217 kb on + strand, within DvMF_0424 at 499.422 kb on - strand, within DvMF_0424 at 499.450 kb on - strand, within DvMF_0424 at 499.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 497,773 - DvMF_0422 0.60 -0.4 498,096 + DvMF_0423 0.26 +0.2 498,096 + DvMF_0423 0.26 +0.3 498,270 + DvMF_0423 0.59 -0.3 498,286 + DvMF_0423 0.62 +0.4 498,418 - DvMF_0423 0.88 -0.2 498,438 - +0.5 498,438 - +0.1 498,455 + +0.4 499,120 - DvMF_0424 0.44 -1.9 499,217 + DvMF_0424 0.55 -2.1 499,422 - DvMF_0424 0.79 -2.2 499,450 - DvMF_0424 0.82 -1.7 499,705 + -2.2
Or see this region's nucleotide sequence