Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0419 and DvMF_0420 are separated by 222 nucleotides DvMF_0420 and DvMF_0421 are separated by 153 nucleotides DvMF_0421 and DvMF_0422 are separated by 129 nucleotides
DvMF_0419: DvMF_0419 - metal dependent phosphohydrolase (RefSeq), at 494,082 to 495,497
_0419
DvMF_0420: DvMF_0420 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 495,720 to 496,640
_0420
DvMF_0421: DvMF_0421 - hypothetical protein (RefSeq), at 496,794 to 497,363
_0421
DvMF_0422: DvMF_0422 - PTS system sorbose subfamily IIB component (RefSeq), at 497,493 to 497,957
_0422
Position (kb) 495
496
497 Strain fitness (log2 ratio) -1
0
1 at 494.739 kb on + strand, within DvMF_0419 at 494.744 kb on + strand, within DvMF_0419 at 494.863 kb on + strand, within DvMF_0419 at 494.868 kb on + strand, within DvMF_0419 at 494.876 kb on - strand, within DvMF_0419 at 495.078 kb on - strand, within DvMF_0419 at 495.079 kb on - strand, within DvMF_0419 at 495.256 kb on - strand, within DvMF_0419 at 495.401 kb on + strand at 495.566 kb on + strand at 496.913 kb on - strand, within DvMF_0421 at 497.089 kb on - strand, within DvMF_0421 at 497.305 kb on + strand, within DvMF_0421 at 497.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 494,739 + DvMF_0419 0.46 -0.6 494,744 + DvMF_0419 0.47 -0.1 494,863 + DvMF_0419 0.55 +0.1 494,868 + DvMF_0419 0.56 -0.3 494,876 - DvMF_0419 0.56 -0.1 495,078 - DvMF_0419 0.70 +0.5 495,079 - DvMF_0419 0.70 -0.7 495,256 - DvMF_0419 0.83 -0.1 495,401 + -0.5 495,566 + -0.3 496,913 - DvMF_0421 0.21 +0.0 497,089 - DvMF_0421 0.52 -0.1 497,305 + DvMF_0421 0.90 -0.5 497,308 - -0.3
Or see this region's nucleotide sequence