Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0161 and DvMF_0162 are separated by 791 nucleotides DvMF_0162 and DvMF_0163 are separated by 335 nucleotides DvMF_0163 and DvMF_0164 are separated by 81 nucleotides
DvMF_0161: DvMF_0161 - integral membrane protein (RefSeq), at 174,367 to 176,121
_0161
DvMF_0162: DvMF_0162 - hypothetical protein (RefSeq), at 176,913 to 178,202
_0162
DvMF_0163: DvMF_0163 - no description, at 178,538 to 178,755
_0163
DvMF_0164: DvMF_0164 - hypothetical protein (RefSeq), at 178,837 to 179,658
_0164
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -1
0
1 at 175.922 kb on - strand, within DvMF_0161 at 176.188 kb on + strand at 176.228 kb on - strand at 176.356 kb on + strand at 176.400 kb on + strand at 176.580 kb on + strand at 176.894 kb on + strand at 176.960 kb on + strand at 177.024 kb on - strand at 177.179 kb on + strand, within DvMF_0162 at 177.233 kb on + strand, within DvMF_0162 at 177.233 kb on + strand, within DvMF_0162 at 177.302 kb on + strand, within DvMF_0162 at 177.642 kb on - strand, within DvMF_0162 at 177.764 kb on - strand, within DvMF_0162 at 177.871 kb on - strand, within DvMF_0162 at 177.940 kb on + strand, within DvMF_0162 at 177.948 kb on - strand, within DvMF_0162 at 177.976 kb on + strand, within DvMF_0162 at 177.984 kb on - strand, within DvMF_0162 at 177.984 kb on - strand, within DvMF_0162 at 178.104 kb on - strand at 178.291 kb on - strand at 178.319 kb on + strand at 178.415 kb on + strand at 178.591 kb on + strand, within DvMF_0163 at 178.591 kb on + strand, within DvMF_0163 at 178.591 kb on + strand, within DvMF_0163 at 178.599 kb on - strand, within DvMF_0163 at 178.788 kb on + strand at 178.796 kb on - strand at 178.796 kb on - strand at 178.833 kb on - strand at 178.853 kb on - strand at 178.882 kb on - strand at 178.962 kb on + strand, within DvMF_0164 at 179.071 kb on - strand, within DvMF_0164
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 175,922 - DvMF_0161 0.89 +1.3 176,188 + -0.0 176,228 - -0.5 176,356 + +0.2 176,400 + +0.1 176,580 + +0.3 176,894 + -0.1 176,960 + -0.5 177,024 - -0.8 177,179 + DvMF_0162 0.21 -0.5 177,233 + DvMF_0162 0.25 -0.8 177,233 + DvMF_0162 0.25 -0.8 177,302 + DvMF_0162 0.30 -0.7 177,642 - DvMF_0162 0.57 -0.6 177,764 - DvMF_0162 0.66 -1.3 177,871 - DvMF_0162 0.74 -0.4 177,940 + DvMF_0162 0.80 -0.3 177,948 - DvMF_0162 0.80 -0.5 177,976 + DvMF_0162 0.82 -0.6 177,984 - DvMF_0162 0.83 -0.3 177,984 - DvMF_0162 0.83 -0.7 178,104 - +1.0 178,291 - -0.2 178,319 + -0.1 178,415 + +0.1 178,591 + DvMF_0163 0.24 -0.2 178,591 + DvMF_0163 0.24 -0.2 178,591 + DvMF_0163 0.24 -0.1 178,599 - DvMF_0163 0.28 -0.5 178,788 + -0.6 178,796 - -0.9 178,796 - -0.2 178,833 - -0.5 178,853 - -0.2 178,882 - -1.0 178,962 + DvMF_0164 0.15 -0.1 179,071 - DvMF_0164 0.28 +0.1
Or see this region's nucleotide sequence