Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0159 and DvMF_0160 are separated by 220 nucleotides DvMF_0160 and DvMF_0161 are separated by 151 nucleotides DvMF_0161 and DvMF_0162 are separated by 791 nucleotides
DvMF_0159: DvMF_0159 - HesB-like domain-containing protein (RefSeq), at 173,168 to 173,461
_0159
DvMF_0160: DvMF_0160 - bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (RefSeq), at 173,682 to 174,215
_0160
DvMF_0161: DvMF_0161 - integral membrane protein (RefSeq), at 174,367 to 176,121
_0161
DvMF_0162: DvMF_0162 - hypothetical protein (RefSeq), at 176,913 to 178,202
_0162
Position (kb) 174
175
176
177 Strain fitness (log2 ratio) -1
0
1 at 173.577 kb on - strand at 173.872 kb on - strand, within DvMF_0160 at 173.872 kb on - strand, within DvMF_0160 at 174.218 kb on - strand at 175.303 kb on + strand, within DvMF_0161 at 175.880 kb on + strand, within DvMF_0161 at 175.922 kb on - strand, within DvMF_0161 at 176.188 kb on + strand at 176.228 kb on - strand at 176.356 kb on + strand at 176.400 kb on + strand at 176.580 kb on + strand at 176.894 kb on + strand at 176.960 kb on + strand at 177.024 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 173,577 - -0.2 173,872 - DvMF_0160 0.36 -0.4 173,872 - DvMF_0160 0.36 -0.3 174,218 - -0.1 175,303 + DvMF_0161 0.53 +0.9 175,880 + DvMF_0161 0.86 +0.8 175,922 - DvMF_0161 0.89 +1.3 176,188 + -0.0 176,228 - -0.5 176,356 + +0.2 176,400 + +0.1 176,580 + +0.3 176,894 + -0.1 176,960 + -0.5 177,024 - -0.8
Or see this region's nucleotide sequence