Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0148 and DvMF_0149 are separated by 242 nucleotides DvMF_0149 and DvMF_0150 are separated by 9 nucleotides DvMF_0150 and DvMF_0151 overlap by 14 nucleotides DvMF_0151 and DvMF_0152 are separated by 29 nucleotides
DvMF_0148: DvMF_0148 - HAD-superfamily hydrolase, subfamily IA, variant 1 (RefSeq), at 164,879 to 165,622
_0148
DvMF_0149: DvMF_0149 - protein of unknown function YGGT (RefSeq), at 165,865 to 166,167
_0149
DvMF_0150: DvMF_0150 - DivIVA family protein (RefSeq), at 166,177 to 166,686
_0150
DvMF_0151: DvMF_0151 - protein of unknown function DUF167 (RefSeq), at 166,673 to 166,993
_0151
DvMF_0152: DvMF_0152 - hypothetical protein (RefSeq), at 167,023 to 167,253
_0152
Position (kb) 165
166
167 Strain fitness (log2 ratio) -1
0
1 at 164.891 kb on - strand at 165.184 kb on + strand, within DvMF_0148 at 165.333 kb on - strand, within DvMF_0148 at 165.333 kb on - strand, within DvMF_0148 at 165.374 kb on - strand, within DvMF_0148 at 165.386 kb on + strand, within DvMF_0148 at 165.499 kb on + strand, within DvMF_0148 at 165.743 kb on + strand at 165.743 kb on + strand at 165.743 kb on + strand at 166.078 kb on - strand, within DvMF_0149 at 166.249 kb on - strand, within DvMF_0150 at 166.452 kb on - strand, within DvMF_0150 at 166.500 kb on + strand, within DvMF_0150 at 166.630 kb on + strand, within DvMF_0150 at 166.823 kb on + strand, within DvMF_0151
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 164,891 - -0.3 165,184 + DvMF_0148 0.41 -0.5 165,333 - DvMF_0148 0.61 -0.1 165,333 - DvMF_0148 0.61 -0.6 165,374 - DvMF_0148 0.67 -0.3 165,386 + DvMF_0148 0.68 -0.3 165,499 + DvMF_0148 0.83 +0.2 165,743 + -0.6 165,743 + -0.4 165,743 + +0.0 166,078 - DvMF_0149 0.70 +0.6 166,249 - DvMF_0150 0.14 -0.8 166,452 - DvMF_0150 0.54 -0.0 166,500 + DvMF_0150 0.63 +0.3 166,630 + DvMF_0150 0.89 -0.2 166,823 + DvMF_0151 0.47 -0.1
Or see this region's nucleotide sequence