Experiment: 6 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_R0006 and DvMF_0043 are separated by 404 nucleotides DvMF_0043 and DvMF_0044 are separated by 106 nucleotides
DvMF_R0006: DvMF_R0006 - tRNA-Thr (RefSeq), at 56,999 to 57,074
_R0006
DvMF_0043: DvMF_0043 - hypothetical protein (RefSeq), at 57,479 to 59,059
_0043
DvMF_0044: DvMF_0044 - Homocysteine formation from aspartate semialdehyde (COG2122 or apbE like component) <small>(from data)</small>, at 59,166 to 59,999
_0044
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 56.571 kb on + strand at 56.586 kb on - strand at 56.654 kb on - strand at 56.895 kb on + strand at 57.187 kb on + strand at 57.303 kb on + strand at 57.615 kb on - strand at 57.643 kb on + strand, within DvMF_0043 at 57.780 kb on - strand, within DvMF_0043 at 58.119 kb on + strand, within DvMF_0043 at 58.228 kb on - strand, within DvMF_0043 at 58.314 kb on - strand, within DvMF_0043 at 58.519 kb on - strand, within DvMF_0043 at 58.759 kb on + strand, within DvMF_0043 at 58.785 kb on + strand, within DvMF_0043 at 58.795 kb on + strand, within DvMF_0043 at 58.803 kb on - strand, within DvMF_0043 at 59.116 kb on + strand at 59.159 kb on + strand at 59.172 kb on - strand at 59.373 kb on - strand, within DvMF_0044 at 59.375 kb on + strand, within DvMF_0044 at 59.455 kb on - strand, within DvMF_0044 at 59.503 kb on - strand, within DvMF_0044 at 59.929 kb on + strand at 59.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6 days starvation remove 56,571 + -0.3 56,586 - -0.4 56,654 - -0.4 56,895 + -0.1 57,187 + -1.4 57,303 + -0.4 57,615 - -0.4 57,643 + DvMF_0043 0.10 -0.4 57,780 - DvMF_0043 0.19 +2.7 58,119 + DvMF_0043 0.40 -0.2 58,228 - DvMF_0043 0.47 -0.3 58,314 - DvMF_0043 0.53 -0.4 58,519 - DvMF_0043 0.66 +0.0 58,759 + DvMF_0043 0.81 +0.5 58,785 + DvMF_0043 0.83 -0.3 58,795 + DvMF_0043 0.83 +0.2 58,803 - DvMF_0043 0.84 -0.4 59,116 + -0.1 59,159 + +0.7 59,172 - -0.6 59,373 - DvMF_0044 0.25 -6.4 59,375 + DvMF_0044 0.25 -5.2 59,455 - DvMF_0044 0.35 -6.1 59,503 - DvMF_0044 0.40 -7.7 59,929 + -1.8 59,931 - +1.0
Or see this region's nucleotide sequence