Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0012

Experiment: 6 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0011 and DvMF_0012 are separated by 231 nucleotidesDvMF_0012 and DvMF_0013 are separated by 21 nucleotides DvMF_0011: DvMF_0011 - L-serine ammonia-lyase (EC 4.3.1.17) (from data), at 14,550 to 15,929 _0011 DvMF_0012: DvMF_0012 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 16,161 to 17,159 _0012 DvMF_0013: DvMF_0013 - fructose-1,6-bisphosphate aldolase, class II (RefSeq), at 17,181 to 18,104 _0013 Position (kb) 16 17 18Strain fitness (log2 ratio) -1 0 1at 15.323 kb on + strand, within DvMF_0011at 15.452 kb on + strand, within DvMF_0011at 15.452 kb on + strand, within DvMF_0011at 15.452 kb on + strand, within DvMF_0011at 15.452 kb on + strand, within DvMF_0011at 15.452 kb on + strand, within DvMF_0011at 15.460 kb on - strand, within DvMF_0011at 15.572 kb on - strand, within DvMF_0011at 15.701 kb on - strand, within DvMF_0011at 15.769 kb on - strand, within DvMF_0011at 15.801 kb on + strandat 15.921 kb on - strandat 16.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 days starvation
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15,323 + DvMF_0011 0.56 -0.5
15,452 + DvMF_0011 0.65 -0.5
15,452 + DvMF_0011 0.65 -0.5
15,452 + DvMF_0011 0.65 +0.1
15,452 + DvMF_0011 0.65 -0.3
15,452 + DvMF_0011 0.65 -0.1
15,460 - DvMF_0011 0.66 -0.5
15,572 - DvMF_0011 0.74 -0.3
15,701 - DvMF_0011 0.83 -0.3
15,769 - DvMF_0011 0.88 +0.0
15,801 + +0.3
15,921 - -0.7
16,019 - -1.1

Or see this region's nucleotide sequence