Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4010 and Shewana3_4011 are separated by 61 nucleotides Shewana3_4011 and Shewana3_4012 are separated by 66 nucleotides Shewana3_4012 and Shewana3_4013 are separated by 217 nucleotides
Shewana3_4010: Shewana3_4010 - bioH protein (RefSeq), at 4,813,801 to 4,814,595
_4010
Shewana3_4011: Shewana3_4011 - hypothetical protein (RefSeq), at 4,814,657 to 4,815,211
_4011
Shewana3_4012: Shewana3_4012 - sulfatase (RefSeq), at 4,815,278 to 4,817,242
_4012
Shewana3_4013: Shewana3_4013 - RNA-binding S1 domain-containing protein (RefSeq), at 4,817,460 to 4,819,799
_4013
Position (kb) 4815
4816
4817
4818 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4814.598 kb on - strand at 4815.144 kb on + strand, within Shewana3_4011 at 4815.154 kb on + strand, within Shewana3_4011 at 4815.183 kb on - strand at 4815.310 kb on + strand at 4815.335 kb on + strand at 4815.513 kb on + strand, within Shewana3_4012 at 4815.544 kb on - strand, within Shewana3_4012 at 4815.544 kb on - strand, within Shewana3_4012 at 4815.546 kb on + strand, within Shewana3_4012 at 4815.701 kb on - strand, within Shewana3_4012 at 4815.823 kb on + strand, within Shewana3_4012 at 4815.823 kb on + strand, within Shewana3_4012 at 4815.841 kb on + strand, within Shewana3_4012 at 4815.849 kb on - strand, within Shewana3_4012 at 4815.849 kb on - strand, within Shewana3_4012 at 4815.956 kb on + strand, within Shewana3_4012 at 4816.490 kb on - strand, within Shewana3_4012 at 4816.496 kb on + strand, within Shewana3_4012 at 4816.496 kb on + strand, within Shewana3_4012 at 4816.504 kb on + strand, within Shewana3_4012 at 4816.504 kb on - strand, within Shewana3_4012 at 4816.512 kb on - strand, within Shewana3_4012 at 4816.512 kb on - strand, within Shewana3_4012 at 4816.512 kb on - strand, within Shewana3_4012 at 4816.512 kb on - strand, within Shewana3_4012 at 4816.512 kb on - strand, within Shewana3_4012 at 4816.512 kb on - strand, within Shewana3_4012 at 4816.512 kb on - strand, within Shewana3_4012 at 4816.583 kb on + strand, within Shewana3_4012 at 4816.770 kb on + strand, within Shewana3_4012 at 4816.775 kb on + strand, within Shewana3_4012 at 4816.912 kb on + strand, within Shewana3_4012 at 4816.919 kb on + strand, within Shewana3_4012 at 4816.944 kb on - strand, within Shewana3_4012 at 4817.120 kb on + strand at 4817.133 kb on - strand at 4817.134 kb on - strand at 4817.249 kb on + strand at 4817.274 kb on + strand at 4817.274 kb on + strand at 4817.499 kb on + strand at 4817.545 kb on + strand at 4817.553 kb on - strand at 4817.596 kb on - strand at 4817.739 kb on + strand, within Shewana3_4013 at 4817.822 kb on + strand, within Shewana3_4013 at 4817.867 kb on + strand, within Shewana3_4013 at 4817.875 kb on - strand, within Shewana3_4013 at 4817.893 kb on + strand, within Shewana3_4013 at 4818.054 kb on - strand, within Shewana3_4013 at 4818.074 kb on + strand, within Shewana3_4013 at 4818.167 kb on - strand, within Shewana3_4013
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 4,814,598 - -0.9 4,815,144 + Shewana3_4011 0.88 -1.0 4,815,154 + Shewana3_4011 0.90 +0.4 4,815,183 - +0.3 4,815,310 + -1.2 4,815,335 + +1.5 4,815,513 + Shewana3_4012 0.12 -1.0 4,815,544 - Shewana3_4012 0.14 -0.4 4,815,544 - Shewana3_4012 0.14 -4.2 4,815,546 + Shewana3_4012 0.14 +0.4 4,815,701 - Shewana3_4012 0.22 -1.2 4,815,823 + Shewana3_4012 0.28 -1.6 4,815,823 + Shewana3_4012 0.28 -0.0 4,815,841 + Shewana3_4012 0.29 +1.4 4,815,849 - Shewana3_4012 0.29 -0.2 4,815,849 - Shewana3_4012 0.29 +0.1 4,815,956 + Shewana3_4012 0.35 -2.0 4,816,490 - Shewana3_4012 0.62 +0.4 4,816,496 + Shewana3_4012 0.62 -0.9 4,816,496 + Shewana3_4012 0.62 +0.4 4,816,504 + Shewana3_4012 0.62 -0.6 4,816,504 - Shewana3_4012 0.62 -1.4 4,816,512 - Shewana3_4012 0.63 -1.2 4,816,512 - Shewana3_4012 0.63 +2.0 4,816,512 - Shewana3_4012 0.63 -1.2 4,816,512 - Shewana3_4012 0.63 +2.6 4,816,512 - Shewana3_4012 0.63 -0.6 4,816,512 - Shewana3_4012 0.63 -0.6 4,816,512 - Shewana3_4012 0.63 +0.0 4,816,583 + Shewana3_4012 0.66 +1.3 4,816,770 + Shewana3_4012 0.76 -0.2 4,816,775 + Shewana3_4012 0.76 -1.3 4,816,912 + Shewana3_4012 0.83 +1.0 4,816,919 + Shewana3_4012 0.84 +0.2 4,816,944 - Shewana3_4012 0.85 -0.1 4,817,120 + -0.0 4,817,133 - +0.6 4,817,134 - +0.2 4,817,249 + +1.2 4,817,274 + -1.4 4,817,274 + +0.5 4,817,499 + -0.4 4,817,545 + -0.5 4,817,553 - +2.2 4,817,596 - -0.5 4,817,739 + Shewana3_4013 0.12 +0.8 4,817,822 + Shewana3_4013 0.15 +1.2 4,817,867 + Shewana3_4013 0.17 -0.6 4,817,875 - Shewana3_4013 0.18 -0.8 4,817,893 + Shewana3_4013 0.19 +0.7 4,818,054 - Shewana3_4013 0.25 +0.4 4,818,074 + Shewana3_4013 0.26 +0.5 4,818,167 - Shewana3_4013 0.30 +1.0
Or see this region's nucleotide sequence