Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3499 and Shewana3_3500 are separated by 122 nucleotides Shewana3_3500 and gcvT are separated by 25 nucleotides gcvT and Shewana3_3502 are separated by 398 nucleotides
Shewana3_3499: Shewana3_3499 - glycine dehydrogenase (RefSeq), at 4,198,244 to 4,201,132
_3499
Shewana3_3500: Shewana3_3500 - glycine cleavage system protein H (RefSeq), at 4,201,255 to 4,201,644
_3500
Shewana3_3501: gcvT - glycine cleavage system aminomethyltransferase T (RefSeq), at 4,201,670 to 4,202,764
gcvT
Shewana3_3502: Shewana3_3502 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq), at 4,203,163 to 4,204,386
_3502
Position (kb) 4201
4202
4203 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 4200.925 kb on - strand at 4200.930 kb on + strand at 4201.140 kb on - strand at 4201.237 kb on - strand at 4201.297 kb on - strand, within Shewana3_3500 at 4201.540 kb on - strand, within Shewana3_3500 at 4201.547 kb on - strand, within Shewana3_3500 at 4201.943 kb on + strand, within gcvT at 4202.126 kb on + strand, within gcvT at 4202.134 kb on - strand, within gcvT at 4202.288 kb on - strand, within gcvT at 4202.298 kb on + strand, within gcvT at 4202.423 kb on + strand, within gcvT at 4202.431 kb on - strand, within gcvT at 4202.446 kb on - strand, within gcvT at 4202.518 kb on - strand, within gcvT at 4202.594 kb on - strand, within gcvT at 4202.649 kb on + strand, within gcvT at 4202.710 kb on - strand at 4202.793 kb on + strand at 4202.805 kb on + strand at 4202.924 kb on + strand at 4202.962 kb on + strand at 4202.962 kb on + strand at 4203.647 kb on - strand, within Shewana3_3502
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 4,200,925 - -3.6 4,200,930 + -4.0 4,201,140 - -5.6 4,201,237 - -3.6 4,201,297 - Shewana3_3500 0.11 -5.8 4,201,540 - Shewana3_3500 0.73 -5.8 4,201,547 - Shewana3_3500 0.75 -4.9 4,201,943 + gcvT Shewana3_3501 0.25 -3.5 4,202,126 + gcvT Shewana3_3501 0.42 -4.0 4,202,134 - gcvT Shewana3_3501 0.42 -5.6 4,202,288 - gcvT Shewana3_3501 0.56 -3.6 4,202,298 + gcvT Shewana3_3501 0.57 -1.2 4,202,423 + gcvT Shewana3_3501 0.69 -5.7 4,202,431 - gcvT Shewana3_3501 0.69 -4.2 4,202,446 - gcvT Shewana3_3501 0.71 -6.0 4,202,518 - gcvT Shewana3_3501 0.77 -1.5 4,202,594 - gcvT Shewana3_3501 0.84 -4.9 4,202,649 + gcvT Shewana3_3501 0.89 -4.6 4,202,710 - -6.6 4,202,793 + -5.5 4,202,805 + -2.2 4,202,924 + -3.4 4,202,962 + -3.9 4,202,962 + -4.5 4,203,647 - Shewana3_3502 0.40 -0.1
Or see this region's nucleotide sequence