Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3475 and rihA are separated by 294 nucleotides rihA and Shewana3_3477 are separated by 18 nucleotides
Shewana3_3475: Shewana3_3475 - hypothetical protein (RefSeq), at 4,168,591 to 4,169,865
_3475
Shewana3_3476: rihA - ribonucleoside hydrolase 1 (RefSeq), at 4,170,160 to 4,171,116
rihA
Shewana3_3477: Shewana3_3477 - ribokinase (RefSeq), at 4,171,135 to 4,172,046
_3477
Position (kb) 4170
4171
4172 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4169.270 kb on - strand, within Shewana3_3475 at 4169.270 kb on - strand, within Shewana3_3475 at 4169.430 kb on + strand, within Shewana3_3475 at 4169.675 kb on + strand, within Shewana3_3475 at 4169.844 kb on + strand at 4169.884 kb on + strand at 4169.950 kb on + strand at 4169.958 kb on + strand at 4170.021 kb on - strand at 4170.092 kb on - strand at 4170.150 kb on - strand at 4170.158 kb on - strand at 4170.314 kb on + strand, within rihA at 4170.314 kb on + strand, within rihA at 4170.320 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.361 kb on + strand, within rihA at 4170.367 kb on + strand, within rihA at 4170.375 kb on - strand, within rihA at 4170.405 kb on + strand, within rihA at 4170.405 kb on + strand, within rihA at 4170.526 kb on - strand, within rihA at 4170.532 kb on + strand, within rihA at 4170.668 kb on + strand, within rihA at 4170.676 kb on - strand, within rihA at 4170.722 kb on + strand, within rihA at 4170.911 kb on - strand, within rihA at 4171.040 kb on + strand at 4171.074 kb on + strand at 4171.076 kb on + strand at 4171.213 kb on + strand at 4171.391 kb on + strand, within Shewana3_3477 at 4171.391 kb on + strand, within Shewana3_3477 at 4171.399 kb on - strand, within Shewana3_3477 at 4171.504 kb on - strand, within Shewana3_3477 at 4171.578 kb on + strand, within Shewana3_3477 at 4171.624 kb on + strand, within Shewana3_3477 at 4171.698 kb on + strand, within Shewana3_3477 at 4171.809 kb on - strand, within Shewana3_3477 at 4171.840 kb on - strand, within Shewana3_3477 at 4172.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 4,169,270 - Shewana3_3475 0.53 -0.3 4,169,270 - Shewana3_3475 0.53 +0.7 4,169,430 + Shewana3_3475 0.66 +0.7 4,169,675 + Shewana3_3475 0.85 -2.3 4,169,844 + -0.4 4,169,884 + +1.1 4,169,950 + +0.0 4,169,958 + +0.2 4,170,021 - +2.8 4,170,092 - +0.5 4,170,150 - -0.9 4,170,158 - +0.3 4,170,314 + rihA Shewana3_3476 0.16 -0.6 4,170,314 + rihA Shewana3_3476 0.16 +0.1 4,170,320 - rihA Shewana3_3476 0.17 -0.3 4,170,322 - rihA Shewana3_3476 0.17 +0.5 4,170,322 - rihA Shewana3_3476 0.17 -0.1 4,170,322 - rihA Shewana3_3476 0.17 -0.4 4,170,322 - rihA Shewana3_3476 0.17 +0.2 4,170,361 + rihA Shewana3_3476 0.21 +1.0 4,170,367 + rihA Shewana3_3476 0.22 +1.0 4,170,375 - rihA Shewana3_3476 0.22 -0.5 4,170,405 + rihA Shewana3_3476 0.26 +1.0 4,170,405 + rihA Shewana3_3476 0.26 -3.0 4,170,526 - rihA Shewana3_3476 0.38 +0.4 4,170,532 + rihA Shewana3_3476 0.39 -3.1 4,170,668 + rihA Shewana3_3476 0.53 -0.2 4,170,676 - rihA Shewana3_3476 0.54 +0.6 4,170,722 + rihA Shewana3_3476 0.59 -1.3 4,170,911 - rihA Shewana3_3476 0.78 +0.4 4,171,040 + +0.9 4,171,074 + +0.7 4,171,076 + -0.4 4,171,213 + -1.8 4,171,391 + Shewana3_3477 0.28 -0.1 4,171,391 + Shewana3_3477 0.28 +2.0 4,171,399 - Shewana3_3477 0.29 -0.9 4,171,504 - Shewana3_3477 0.40 -1.2 4,171,578 + Shewana3_3477 0.49 +0.4 4,171,624 + Shewana3_3477 0.54 -0.2 4,171,698 + Shewana3_3477 0.62 -3.8 4,171,809 - Shewana3_3477 0.74 +0.9 4,171,840 - Shewana3_3477 0.77 -0.1 4,172,035 + +0.2
Or see this region's nucleotide sequence