Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3385

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3384 and Shewana3_3385 are separated by 426 nucleotidesShewana3_3385 and Shewana3_3386 are separated by 459 nucleotidesShewana3_3386 and Shewana3_3387 are separated by 110 nucleotides Shewana3_3384: Shewana3_3384 - ATP-dependent RNA helicase DbpA (RefSeq), at 4,055,553 to 4,056,992 _3384 Shewana3_3385: Shewana3_3385 - hypoxanthine phosphoribosyltransferase (RefSeq), at 4,057,419 to 4,058,276 _3385 Shewana3_3386: Shewana3_3386 - hypothetical protein (RefSeq), at 4,058,736 to 4,058,843 _3386 Shewana3_3387: Shewana3_3387 - hypothetical protein (RefSeq), at 4,058,954 to 4,059,406 _3387 Position (kb) 4057 4058 4059Strain fitness (log2 ratio) -1 0 1 2at 4056.707 kb on + strand, within Shewana3_3384at 4056.707 kb on + strand, within Shewana3_3384at 4056.707 kb on + strand, within Shewana3_3384at 4056.715 kb on - strand, within Shewana3_3384at 4056.715 kb on - strand, within Shewana3_3384at 4056.737 kb on + strand, within Shewana3_3384at 4056.798 kb on - strand, within Shewana3_3384at 4056.879 kb on + strandat 4056.916 kb on - strandat 4056.988 kb on + strandat 4057.022 kb on + strandat 4057.063 kb on - strandat 4057.127 kb on - strandat 4057.409 kb on - strandat 4057.445 kb on + strandat 4057.696 kb on + strand, within Shewana3_3385at 4057.821 kb on + strand, within Shewana3_3385at 4057.830 kb on - strand, within Shewana3_3385at 4057.896 kb on + strand, within Shewana3_3385at 4058.290 kb on + strandat 4058.341 kb on - strandat 4058.371 kb on - strandat 4058.537 kb on + strandat 4058.537 kb on + strandat 4058.579 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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4,056,707 + Shewana3_3384 0.80 -1.1
4,056,707 + Shewana3_3384 0.80 +0.7
4,056,707 + Shewana3_3384 0.80 +0.2
4,056,715 - Shewana3_3384 0.81 +2.4
4,056,715 - Shewana3_3384 0.81 -0.1
4,056,737 + Shewana3_3384 0.82 -1.6
4,056,798 - Shewana3_3384 0.86 +0.9
4,056,879 + +0.3
4,056,916 - -0.2
4,056,988 + +0.3
4,057,022 + -1.2
4,057,063 - -1.0
4,057,127 - +0.7
4,057,409 - +0.5
4,057,445 + -0.6
4,057,696 + Shewana3_3385 0.32 +1.5
4,057,821 + Shewana3_3385 0.47 +0.7
4,057,830 - Shewana3_3385 0.48 +0.0
4,057,896 + Shewana3_3385 0.56 +1.2
4,058,290 + -1.1
4,058,341 - -0.8
4,058,371 - +1.4
4,058,537 + +0.5
4,058,537 + +0.1
4,058,579 + -1.0

Or see this region's nucleotide sequence