Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3384 and Shewana3_3385 are separated by 426 nucleotides Shewana3_3385 and Shewana3_3386 are separated by 459 nucleotides Shewana3_3386 and Shewana3_3387 are separated by 110 nucleotides
Shewana3_3384: Shewana3_3384 - ATP-dependent RNA helicase DbpA (RefSeq), at 4,055,553 to 4,056,992
_3384
Shewana3_3385: Shewana3_3385 - hypoxanthine phosphoribosyltransferase (RefSeq), at 4,057,419 to 4,058,276
_3385
Shewana3_3386: Shewana3_3386 - hypothetical protein (RefSeq), at 4,058,736 to 4,058,843
_3386
Shewana3_3387: Shewana3_3387 - hypothetical protein (RefSeq), at 4,058,954 to 4,059,406
_3387
Position (kb)
4057
4058
4059 Strain fitness (log2 ratio)
-1
0
1
2 at 4056.707 kb on + strand, within Shewana3_3384 at 4056.707 kb on + strand, within Shewana3_3384 at 4056.707 kb on + strand, within Shewana3_3384 at 4056.715 kb on - strand, within Shewana3_3384 at 4056.715 kb on - strand, within Shewana3_3384 at 4056.737 kb on + strand, within Shewana3_3384 at 4056.798 kb on - strand, within Shewana3_3384 at 4056.879 kb on + strand at 4056.916 kb on - strand at 4056.988 kb on + strand at 4057.022 kb on + strand at 4057.063 kb on - strand at 4057.127 kb on - strand at 4057.409 kb on - strand at 4057.445 kb on + strand at 4057.696 kb on + strand, within Shewana3_3385 at 4057.821 kb on + strand, within Shewana3_3385 at 4057.830 kb on - strand, within Shewana3_3385 at 4057.896 kb on + strand, within Shewana3_3385 at 4058.290 kb on + strand at 4058.341 kb on - strand at 4058.371 kb on - strand at 4058.537 kb on + strand at 4058.537 kb on + strand at 4058.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 4,056,707 + Shewana3_3384 0.80 -1.1 4,056,707 + Shewana3_3384 0.80 +0.7 4,056,707 + Shewana3_3384 0.80 +0.2 4,056,715 - Shewana3_3384 0.81 +2.4 4,056,715 - Shewana3_3384 0.81 -0.1 4,056,737 + Shewana3_3384 0.82 -1.6 4,056,798 - Shewana3_3384 0.86 +0.9 4,056,879 + +0.3 4,056,916 - -0.2 4,056,988 + +0.3 4,057,022 + -1.2 4,057,063 - -1.0 4,057,127 - +0.7 4,057,409 - +0.5 4,057,445 + -0.6 4,057,696 + Shewana3_3385 0.32 +1.5 4,057,821 + Shewana3_3385 0.47 +0.7 4,057,830 - Shewana3_3385 0.48 +0.0 4,057,896 + Shewana3_3385 0.56 +1.2 4,058,290 + -1.1 4,058,341 - -0.8 4,058,371 - +1.4 4,058,537 + +0.5 4,058,537 + +0.1 4,058,579 + -1.0
Or see this region's nucleotide sequence