Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3363 and Shewana3_3364 are separated by 220 nucleotides Shewana3_3364 and Shewana3_3365 are separated by 59 nucleotides Shewana3_3365 and Shewana3_3366 are separated by 443 nucleotides
Shewana3_3363: Shewana3_3363 - hypothetical protein (RefSeq), at 4,033,311 to 4,033,607
_3363
Shewana3_3364: Shewana3_3364 - GCN5-related N-acetyltransferase (RefSeq), at 4,033,828 to 4,034,271
_3364
Shewana3_3365: Shewana3_3365 - serine transporter, putative (RefSeq), at 4,034,331 to 4,035,623
_3365
Shewana3_3366: Shewana3_3366 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,036,067 to 4,038,634
_3366
Position (kb)
4034
4035
4036 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4033.444 kb on - strand, within Shewana3_3363 at 4033.516 kb on - strand, within Shewana3_3363 at 4033.628 kb on - strand at 4033.775 kb on - strand at 4033.792 kb on - strand at 4033.908 kb on - strand, within Shewana3_3364 at 4033.932 kb on + strand, within Shewana3_3364 at 4034.121 kb on + strand, within Shewana3_3364 at 4034.129 kb on - strand, within Shewana3_3364 at 4034.244 kb on - strand at 4034.439 kb on - strand at 4034.439 kb on - strand at 4034.451 kb on - strand at 4034.561 kb on - strand, within Shewana3_3365 at 4034.564 kb on + strand, within Shewana3_3365 at 4034.618 kb on + strand, within Shewana3_3365 at 4034.792 kb on + strand, within Shewana3_3365 at 4034.792 kb on + strand, within Shewana3_3365 at 4034.959 kb on - strand, within Shewana3_3365 at 4034.992 kb on - strand, within Shewana3_3365 at 4035.243 kb on - strand, within Shewana3_3365 at 4035.578 kb on - strand at 4035.582 kb on + strand at 4035.886 kb on + strand at 4036.213 kb on + strand at 4036.274 kb on + strand at 4036.455 kb on + strand, within Shewana3_3366 at 4036.462 kb on - strand, within Shewana3_3366 at 4036.614 kb on - strand, within Shewana3_3366
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 4,033,444 - Shewana3_3363 0.45 +0.6 4,033,516 - Shewana3_3363 0.69 +4.4 4,033,628 - +0.7 4,033,775 - -1.0 4,033,792 - +0.5 4,033,908 - Shewana3_3364 0.18 -0.9 4,033,932 + Shewana3_3364 0.23 +0.5 4,034,121 + Shewana3_3364 0.66 -0.5 4,034,129 - Shewana3_3364 0.68 +0.4 4,034,244 - +0.4 4,034,439 - +1.3 4,034,439 - +2.8 4,034,451 - +1.4 4,034,561 - Shewana3_3365 0.18 +1.9 4,034,564 + Shewana3_3365 0.18 +2.5 4,034,618 + Shewana3_3365 0.22 +1.5 4,034,792 + Shewana3_3365 0.36 +0.5 4,034,792 + Shewana3_3365 0.36 +1.7 4,034,959 - Shewana3_3365 0.49 +1.4 4,034,992 - Shewana3_3365 0.51 +1.7 4,035,243 - Shewana3_3365 0.71 +2.9 4,035,578 - -0.4 4,035,582 + +1.7 4,035,886 + +0.5 4,036,213 + +0.3 4,036,274 + -0.1 4,036,455 + Shewana3_3366 0.15 -0.4 4,036,462 - Shewana3_3366 0.15 -1.1 4,036,614 - Shewana3_3366 0.21 -1.8
Or see this region's nucleotide sequence