Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3365

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3363 and Shewana3_3364 are separated by 220 nucleotidesShewana3_3364 and Shewana3_3365 are separated by 59 nucleotidesShewana3_3365 and Shewana3_3366 are separated by 443 nucleotides Shewana3_3363: Shewana3_3363 - hypothetical protein (RefSeq), at 4,033,311 to 4,033,607 _3363 Shewana3_3364: Shewana3_3364 - GCN5-related N-acetyltransferase (RefSeq), at 4,033,828 to 4,034,271 _3364 Shewana3_3365: Shewana3_3365 - serine transporter, putative (RefSeq), at 4,034,331 to 4,035,623 _3365 Shewana3_3366: Shewana3_3366 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,036,067 to 4,038,634 _3366 Position (kb) 4034 4035 4036Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4033.444 kb on - strand, within Shewana3_3363at 4033.516 kb on - strand, within Shewana3_3363at 4033.628 kb on - strandat 4033.775 kb on - strandat 4033.792 kb on - strandat 4033.908 kb on - strand, within Shewana3_3364at 4033.932 kb on + strand, within Shewana3_3364at 4034.121 kb on + strand, within Shewana3_3364at 4034.129 kb on - strand, within Shewana3_3364at 4034.244 kb on - strandat 4034.439 kb on - strandat 4034.439 kb on - strandat 4034.451 kb on - strandat 4034.561 kb on - strand, within Shewana3_3365at 4034.564 kb on + strand, within Shewana3_3365at 4034.618 kb on + strand, within Shewana3_3365at 4034.792 kb on + strand, within Shewana3_3365at 4034.792 kb on + strand, within Shewana3_3365at 4034.959 kb on - strand, within Shewana3_3365at 4034.992 kb on - strand, within Shewana3_3365at 4035.243 kb on - strand, within Shewana3_3365at 4035.578 kb on - strandat 4035.582 kb on + strandat 4035.886 kb on + strandat 4036.213 kb on + strandat 4036.274 kb on + strandat 4036.455 kb on + strand, within Shewana3_3366at 4036.462 kb on - strand, within Shewana3_3366at 4036.614 kb on - strand, within Shewana3_3366

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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4,033,444 - Shewana3_3363 0.45 +0.6
4,033,516 - Shewana3_3363 0.69 +4.4
4,033,628 - +0.7
4,033,775 - -1.0
4,033,792 - +0.5
4,033,908 - Shewana3_3364 0.18 -0.9
4,033,932 + Shewana3_3364 0.23 +0.5
4,034,121 + Shewana3_3364 0.66 -0.5
4,034,129 - Shewana3_3364 0.68 +0.4
4,034,244 - +0.4
4,034,439 - +1.3
4,034,439 - +2.8
4,034,451 - +1.4
4,034,561 - Shewana3_3365 0.18 +1.9
4,034,564 + Shewana3_3365 0.18 +2.5
4,034,618 + Shewana3_3365 0.22 +1.5
4,034,792 + Shewana3_3365 0.36 +0.5
4,034,792 + Shewana3_3365 0.36 +1.7
4,034,959 - Shewana3_3365 0.49 +1.4
4,034,992 - Shewana3_3365 0.51 +1.7
4,035,243 - Shewana3_3365 0.71 +2.9
4,035,578 - -0.4
4,035,582 + +1.7
4,035,886 + +0.5
4,036,213 + +0.3
4,036,274 + -0.1
4,036,455 + Shewana3_3366 0.15 -0.4
4,036,462 - Shewana3_3366 0.15 -1.1
4,036,614 - Shewana3_3366 0.21 -1.8

Or see this region's nucleotide sequence