Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3272

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3270 and Shewana3_3271 are separated by 10 nucleotidesShewana3_3271 and Shewana3_3272 are separated by 71 nucleotidesShewana3_3272 and Shewana3_3273 are separated by 15 nucleotides Shewana3_3270: Shewana3_3270 - GCN5-related N-acetyltransferase (RefSeq), at 3,910,772 to 3,911,167 _3270 Shewana3_3271: Shewana3_3271 - cell division protein ZipA (RefSeq), at 3,911,178 to 3,911,732 _3271 Shewana3_3272: Shewana3_3272 - periplasmic binding protein (RefSeq), at 3,911,804 to 3,912,628 _3272 Shewana3_3273: Shewana3_3273 - hypothetical protein (RefSeq), at 3,912,644 to 3,913,681 _3273 Position (kb) 3911 3912 3913Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3911.182 kb on - strandat 3911.272 kb on + strand, within Shewana3_3271at 3911.444 kb on + strand, within Shewana3_3271at 3911.452 kb on - strand, within Shewana3_3271at 3911.599 kb on - strand, within Shewana3_3271at 3911.604 kb on - strand, within Shewana3_3271at 3911.604 kb on - strand, within Shewana3_3271at 3911.604 kb on - strand, within Shewana3_3271at 3911.604 kb on - strand, within Shewana3_3271at 3911.654 kb on + strand, within Shewana3_3271at 3911.796 kb on - strandat 3911.861 kb on - strandat 3911.949 kb on - strand, within Shewana3_3272at 3911.973 kb on - strand, within Shewana3_3272at 3911.973 kb on - strand, within Shewana3_3272at 3911.975 kb on + strand, within Shewana3_3272at 3912.093 kb on - strand, within Shewana3_3272at 3912.129 kb on - strand, within Shewana3_3272at 3912.129 kb on - strand, within Shewana3_3272at 3912.134 kb on - strand, within Shewana3_3272at 3912.229 kb on - strand, within Shewana3_3272at 3912.676 kb on + strandat 3912.676 kb on + strandat 3913.305 kb on - strand, within Shewana3_3273at 3913.371 kb on - strand, within Shewana3_3273at 3913.433 kb on + strand, within Shewana3_3273at 3913.438 kb on + strand, within Shewana3_3273

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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3,911,182 - +0.1
3,911,272 + Shewana3_3271 0.17 -0.2
3,911,444 + Shewana3_3271 0.48 +0.4
3,911,452 - Shewana3_3271 0.49 -1.1
3,911,599 - Shewana3_3271 0.76 -1.0
3,911,604 - Shewana3_3271 0.77 -0.5
3,911,604 - Shewana3_3271 0.77 +1.4
3,911,604 - Shewana3_3271 0.77 +2.5
3,911,604 - Shewana3_3271 0.77 -0.8
3,911,654 + Shewana3_3271 0.86 -0.9
3,911,796 - +0.9
3,911,861 - -2.9
3,911,949 - Shewana3_3272 0.18 -2.1
3,911,973 - Shewana3_3272 0.20 -2.5
3,911,973 - Shewana3_3272 0.20 -2.4
3,911,975 + Shewana3_3272 0.21 -0.1
3,912,093 - Shewana3_3272 0.35 -3.5
3,912,129 - Shewana3_3272 0.39 -2.9
3,912,129 - Shewana3_3272 0.39 -3.2
3,912,134 - Shewana3_3272 0.40 -2.4
3,912,229 - Shewana3_3272 0.52 -3.0
3,912,676 + -2.4
3,912,676 + -0.3
3,913,305 - Shewana3_3273 0.64 +0.1
3,913,371 - Shewana3_3273 0.70 +0.5
3,913,433 + Shewana3_3273 0.76 -1.4
3,913,438 + Shewana3_3273 0.76 -0.6

Or see this region's nucleotide sequence