Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3270 and Shewana3_3271 are separated by 10 nucleotides Shewana3_3271 and Shewana3_3272 are separated by 71 nucleotides Shewana3_3272 and Shewana3_3273 are separated by 15 nucleotides
Shewana3_3270: Shewana3_3270 - GCN5-related N-acetyltransferase (RefSeq), at 3,910,772 to 3,911,167
_3270
Shewana3_3271: Shewana3_3271 - cell division protein ZipA (RefSeq), at 3,911,178 to 3,911,732
_3271
Shewana3_3272: Shewana3_3272 - periplasmic binding protein (RefSeq), at 3,911,804 to 3,912,628
_3272
Shewana3_3273: Shewana3_3273 - hypothetical protein (RefSeq), at 3,912,644 to 3,913,681
_3273
Position (kb)
3911
3912
3913 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3911.182 kb on - strand at 3911.272 kb on + strand, within Shewana3_3271 at 3911.444 kb on + strand, within Shewana3_3271 at 3911.452 kb on - strand, within Shewana3_3271 at 3911.599 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.654 kb on + strand, within Shewana3_3271 at 3911.796 kb on - strand at 3911.861 kb on - strand at 3911.949 kb on - strand, within Shewana3_3272 at 3911.973 kb on - strand, within Shewana3_3272 at 3911.973 kb on - strand, within Shewana3_3272 at 3911.975 kb on + strand, within Shewana3_3272 at 3912.093 kb on - strand, within Shewana3_3272 at 3912.129 kb on - strand, within Shewana3_3272 at 3912.129 kb on - strand, within Shewana3_3272 at 3912.134 kb on - strand, within Shewana3_3272 at 3912.229 kb on - strand, within Shewana3_3272 at 3912.676 kb on + strand at 3912.676 kb on + strand at 3913.305 kb on - strand, within Shewana3_3273 at 3913.371 kb on - strand, within Shewana3_3273 at 3913.433 kb on + strand, within Shewana3_3273 at 3913.438 kb on + strand, within Shewana3_3273
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,911,182 - +0.1 3,911,272 + Shewana3_3271 0.17 -0.2 3,911,444 + Shewana3_3271 0.48 +0.4 3,911,452 - Shewana3_3271 0.49 -1.1 3,911,599 - Shewana3_3271 0.76 -1.0 3,911,604 - Shewana3_3271 0.77 -0.5 3,911,604 - Shewana3_3271 0.77 +1.4 3,911,604 - Shewana3_3271 0.77 +2.5 3,911,604 - Shewana3_3271 0.77 -0.8 3,911,654 + Shewana3_3271 0.86 -0.9 3,911,796 - +0.9 3,911,861 - -2.9 3,911,949 - Shewana3_3272 0.18 -2.1 3,911,973 - Shewana3_3272 0.20 -2.5 3,911,973 - Shewana3_3272 0.20 -2.4 3,911,975 + Shewana3_3272 0.21 -0.1 3,912,093 - Shewana3_3272 0.35 -3.5 3,912,129 - Shewana3_3272 0.39 -2.9 3,912,129 - Shewana3_3272 0.39 -3.2 3,912,134 - Shewana3_3272 0.40 -2.4 3,912,229 - Shewana3_3272 0.52 -3.0 3,912,676 + -2.4 3,912,676 + -0.3 3,913,305 - Shewana3_3273 0.64 +0.1 3,913,371 - Shewana3_3273 0.70 +0.5 3,913,433 + Shewana3_3273 0.76 -1.4 3,913,438 + Shewana3_3273 0.76 -0.6
Or see this region's nucleotide sequence